CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU93178	Sorghum	nucleus	69.9	70.38
Os12t0485400-01	Rice	nucleus	54.76	59.3
TraesCS5A01G103900.2	Wheat	nucleus	51.53	57.6
EES11326	Sorghum	nucleus	47.28	56.73
TraesCS5D01G121900.1	Wheat	nucleus	53.06	55.71
HORVU5Hr1G038970.16	Barley	nucleus	51.02	55.05
TraesCS5B01G112100.2	Wheat	nucleus	52.89	53.44
EER88086	Sorghum	nucleus	43.03	53.15
GSMUA_Achr6P30140_001	Banana	nucleus	43.03	49.9
CDX71123	Canola	nucleus	21.77	48.48
CDX88692	Canola	nucleus	21.43	47.73
AT1G35440.1	Thale cress	cytosol	19.9	47.37
GSMUA_Achr6P31620_001	Banana	cytosol	41.33	47.37
Bra006723.1-P	Field mustard	nucleus	21.26	47.35
KRH50485	Soybean	nucleus	43.88	45.5
CDY26395	Canola	nucleus	40.65	45.44
KRG89442	Soybean	nucleus	43.71	45.25
CDX76472	Canola	nucleus	40.31	44.8
Bra020954.1-P	Field mustard	nucleus	40.14	44.78
CDY09329	Canola	nucleus	40.14	44.44
KRG89447	Soybean	nucleus	42.69	44.27
CDX99359	Canola	nucleus	39.8	43.82
AT4G19600.1	Thale cress	nucleus	40.31	43.81
Bra021950.1-P	Field mustard	nucleus	40.82	42.93
CDY54138	Canola	cytosol	22.96	42.72
VIT_19s0027g01670.t01	Wine grape	nucleus	45.24	42.7
VIT_00s0125g00270.t01	Wine grape	nucleus	42.18	42.32
CDY65933	Canola	nucleus	40.82	42.25
Bra025087.1-P	Field mustard	nucleus	40.48	41.98
CDX82583	Canola	nucleus	40.14	41.62
Solyc10g078180.1.1	Tomato	nucleus	43.88	41.55
AT5G45190.2	Thale cress	nucleus	41.67	41.53
KRH13708	Soybean	nucleus	42.52	41.25
CDY24526	Canola	cytosol, nucleus, peroxisome	22.11	41.14
CDY39416	Canola	nucleus	40.48	41.11
KRH43745	Soybean	nucleus	42.69	41.08
Bra031514.1-P	Field mustard	cytosol	21.94	40.82
CDX99363	Canola	nucleus	27.38	39.95
Bra013402.1-P	Field mustard	nucleus	27.38	39.75
CDX78940	Canola	nucleus	27.38	39.75
AT4G19560.1	Thale cress	nucleus	29.25	37.39
EER97007	Sorghum	nucleus	10.37	23.74
KXG29406	Sorghum	cytosol	21.6	22.97
OQU86869	Sorghum	cytosol, nucleus, plastid	12.41	22.96
EES07541	Sorghum	plastid	26.02	21.95
KXG30252	Sorghum	nucleus	11.05	20.12

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.9	MapMan:15.3.2.1.2	EntrezGene:8064072	UniProt:C5YNQ5	InterPro:Cyclin-like
InterPro:Cyclin-like_sf	InterPro:Cyclin_N	ProteinID:EES17027.1	GO:GO:0000307	GO:GO:0003674	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006464	GO:GO:0007049
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016538	GO:GO:0019538
GO:GO:0030234	GO:GO:0045737	GO:GO:0045944	GO:GO:1901409	EnsemblPlants:KXG23456	ProteinID:KXG23456
ProteinID:KXG23456.1	ProteinID:OQU79114.1	PFAM:PF00134	PANTHER:PTHR10026	PANTHER:PTHR10026:SF103	SMART:SM00385
EnsemblPlantsGene:SORBI_3008G097600	SUPFAM:SSF47954	unigene:Sbi.198	UniParc:UPI0001A883F0	RefSeq:XP_002443189.1	:

Description

hypothetical protein

Coordinates

chr8:-:46351082..46357946

Molecular Weight (calculated)

66094.5 Da

IEP (calculated)

7.598

GRAVY (calculated)

-0.822

Length

588 amino acids

Sequence
(BLAST)

001: MSSSSHRAEY NRSYMAMVPS DFSYHGVVDN GPTGFTQGSR EEACKLGPSW YFSRKELEEN SPSRRDGIDW KKESNLRKSY CKFLQELGKK LKLPQLTIAT
101: AMVFCHRFYL RQSLVKNDRR IIATVCMFLA GKVEETPIPL KDVILISYEF IHKKDPTAGQ RIKQQKELFD KQKELILLGE RVVLVTLEFD LNIHHAYKPL
201: VEAIRRFNVG DINNFPQVAW SFVNDGLSST SLCLQFEPHH IAAGAIFLTA KFLKVKLPSD GDKVWWQEFG VTLEQLEDFS NQMLELYQKN RTTQAQPSHG
301: GEAKGISAGV RNQHSSVKSE ENTKEPSAHG RHQVSRPTNL QHSSSTAAPG HHDVGHSNSD KHFSGHKILQ NDNGGSKVKN RSGTKLDACM DRLHHDKRSS
401: PGHHYSKASY ESHNLAEEHK PHGSHDNSNE TRDSVGDKEA PGLSTLKMDV VHKIDKNKVK AALEKQSKSE GGVSTKVNAM DDDDLLDRGL EHGVELAVED
501: EKVKQGKWDN LSHGSMPPAD LQDTNQAMEN GHHAKQGVPT TAEDMGFPDS KEHHPPAFHR QTDVPEHKAQ QLDHTLKHQK GQDHSQIL

Best Arabidopsis Sequence Match ( AT4G19560.1 )
(BLAST)

001: MDEALNENAS GSESDASSVA SNLHDDEIIP WFFSREEIER NSPSRRDGID LKTETRLRDS YCTFLEILGE RLKVPQVTIA TAIFFCHRFF LRQSHAKNDR
101: QTIATVCMLL AGKVEETPVT LEDVIIASYE RIHKKDLAGA QRKEVYDQQK ELVLIGEELV LSTLNFDLCI SHPYKPLVEA IKKYMVEDAK TQLAQFAWNF
201: VNDCLRTTLC LQYQPHHIAA GAILLAAELP TVDLQSYREV LCQEFDITPC QLEDIRGQIL ELYERIPTSQ ESKVESSGGV AVVHQPISRD MASTEKCPSS
301: DIEGGSSQVN LSQSDDHSVH DGSRSEGIGE VNSESEAQKN LQDHSVGNIM VEKSDDVGVV QLKKDLQLHQ EEVESKQEKD KKSFEKDITK IDLMDEKDLT
401: ESEVEDEINK TMQTGRQIFM KVEDPDDNMT VEHSEIRNAN NSGVDDELVA DTCLINDSDL

Arabidopsis Description

CYCT1-2Cyclin-T1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q56YF8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.