CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
peroxisome 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, peroxisome
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	peroxisome
Plant-mPloc:	nucleus
PProwler:	peroxisome
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G332100.1	Wheat	peroxisome	93.0	93.0
TraesCS6A01G349600.1	Wheat	peroxisome	93.0	93.0
TraesCS6B01G382700.1	Wheat	peroxisome	92.22	92.22
Os09t0504400-01	Rice	nucleus	91.83	91.83
TraesCS5D01G289300.2	Wheat	peroxisome	90.27	89.92
TraesCS5B01G281600.1	Wheat	peroxisome	90.27	89.92
TraesCS5A01G282200.1	Wheat	peroxisome	90.27	89.92
GSMUA_Achr7P02730_001	Banana	cytosol	82.1	80.23
Zm00001d021031_P002	Maize	endoplasmic reticulum, vacuole	97.67	79.68
HORVU6Hr1G083890.3	Barley	plastid	93.0	78.88
KRH46635	Soybean	cytosol	73.15	74.31
VIT_00s0360g00050.t01	Wine grape	cytosol	72.37	74.1
KRG99632	Soybean	cytosol	72.37	73.52
Solyc06g083260.2.1	Tomato	cytosol, nucleus	69.65	71.6
PGSC0003DMT400051796	Potato	cytosol	69.65	71.6
AT5G48640.1	Thale cress	cytosol	66.15	67.19
Bra037473.1-P	Field mustard	mitochondrion	54.09	66.51
CDX86291	Canola	cytosol	64.98	66.27
CDY66082	Canola	cytosol	64.59	65.87
CDY51052	Canola	cytosol	63.81	65.34
CDX85352	Canola	cytosol	63.81	65.08
AT5G48630.2	Thale cress	cytosol, nucleus, plastid	63.03	63.28
CDY51053	Canola	cytosol	62.26	63.24
Bra020686.1-P	Field mustard	cytosol	62.26	63.24
CDY69301	Canola	cytosol	62.26	63.24
Bra020685.1-P	Field mustard	cytosol	47.08	62.05
CDY05665	Canola	endoplasmic reticulum, extracellular	21.79	51.38
EER88086	Sorghum	nucleus	26.07	14.08
EES11326	Sorghum	nucleus	26.46	13.88
OQU86869	Sorghum	cytosol, nucleus, plastid	16.73	13.52
OQU93178	Sorghum	nucleus	27.63	12.16
KXG30252	Sorghum	nucleus	13.62	10.84
KXG23456	Sorghum	nucleus	23.74	10.37
KXG29406	Sorghum	cytosol	20.62	9.58
EES07541	Sorghum	plastid	24.51	9.04

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.3	MapMan:15.3.3.4.4	EntrezGene:8054773	UniProt:C5X4N7	InterPro:Cyclin-like
InterPro:Cyclin-like_sf	InterPro:CyclinC/Ssn8	InterPro:Cyclin_N	EnsemblPlants:EER97007	ProteinID:EER97007	ProteinID:EER97007.1
GO:GO:0000307	GO:GO:0003674	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0006139	GO:GO:0006464	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016538	GO:GO:0016592	GO:GO:0019538	GO:GO:0030234
GO:GO:0045737	GO:GO:0045944	GO:GO:1901409	PFAM:PF00134	PIRSF:PIRSF028758	PANTHER:PTHR10026
PANTHER:PTHR10026:SF7	SMART:SM00385	EnsemblPlantsGene:SORBI_3002G256200	SUPFAM:SSF47954	unigene:Sbi.5517	TMHMM:TMhelix
UniParc:UPI0001A83823	RefSeq:XP_002460486.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:64235907..64243565

Molecular Weight (calculated)

30048.7 Da

IEP (calculated)

6.521

GRAVY (calculated)

-0.077

Length

257 amino acids

Sequence
(BLAST)

001: MAANFWTSSH CKQLLDPDDV DLVPAADRER GITPEEFRLI KIHMSFHIWR LAQQVKVRQR VIATAVTYFR RVYTRKSMSD YDPRLVAPTC LYLASKVEES
101: TVQARLLVFY IKKMCGSDDK YRFEIKDILE MEMKLLEALD YYLVVFHPYR PLLQLLQDAG ITDLTQFAWG LVNDTYKMDL ILIYPPYMIA LACIYIASVL
201: KDKDTTAWFE ELRVDMNIVK NISMEILDFY DTYKIDPQRG IPEDKISSVM NKLPAKA

Best Arabidopsis Sequence Match ( AT5G48630.1 )
(BLAST)

001: MASNFWTSTH YKELKDPEEV NVVHPLDAQR GISVEDFRLI KLHMSNYISK LAQHIKIRQR VVATAVTYMR RVYTRKSLTE YEPRLVAPTC LYLACKAEES
101: VVHAKLLVFY MKKLYADEKF RYEIKDILEM EMKVLEALNF YLVVFHPYRS LPEFLQDSGI NDTSMTHLTW GLVNDTYRMD LILIHPPFLI TLACIYIASV
201: HKEKDIKTWF EELSVDMNIV KNIAMEILDF YENHRLFTEE RVHAAFNKLA TNP

Arabidopsis Description

Cyclin family protein [Source:UniProtKB/TrEMBL;Acc:F4K359]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.