CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027790_P001	Maize	cytosol	39.04	84.44
KXG23456	Sorghum	nucleus	70.38	69.9
Os12t0485400-01	Rice	nucleus	58.05	62.43
TraesCS5A01G103900.2	Wheat	nucleus	55.65	61.79
EES11326	Sorghum	nucleus	51.71	61.63
HORVU5Hr1G038970.16	Barley	nucleus	56.16	60.18
TraesCS5D01G121900.1	Wheat	nucleus	57.71	60.18
EER88086	Sorghum	nucleus	47.6	58.4
TraesCS5B01G112100.2	Wheat	nucleus	57.88	58.08
GSMUA_Achr6P30140_001	Banana	nucleus	46.4	53.45
GSMUA_Achr6P31620_001	Banana	cytosol	45.03	51.27
CDY26395	Canola	nucleus	43.15	47.91
CDX71123	Canola	nucleus	21.4	47.35
KRH50485	Soybean	nucleus	45.89	47.27
KRG89442	Soybean	nucleus	45.55	46.83
CDX88692	Canola	nucleus	21.06	46.59
AT1G35440.1	Thale cress	cytosol	19.69	46.56
AT4G19600.1	Thale cress	nucleus	42.98	46.4
CDX76472	Canola	nucleus	41.95	46.31
Bra020954.1-P	Field mustard	nucleus	41.78	46.3
Bra006723.1-P	Field mustard	nucleus	20.89	46.21
CDY09329	Canola	nucleus	41.95	46.14
KRG89447	Soybean	nucleus	44.52	45.86
CDX99359	Canola	nucleus	41.78	45.69
Bra021950.1-P	Field mustard	nucleus	43.49	45.44
VIT_19s0027g01670.t01	Wine grape	nucleus	48.46	45.43
VIT_00s0125g00270.t01	Wine grape	nucleus	45.21	45.05
Bra025087.1-P	Field mustard	nucleus	43.32	44.62
Solyc10g078180.1.1	Tomato	nucleus	47.26	44.44
CDY65933	Canola	nucleus	43.15	44.37
CDX82583	Canola	nucleus	42.98	44.27
CDY39416	Canola	nucleus	43.32	43.7
KRH13708	Soybean	nucleus	45.21	43.56
AT5G45190.2	Thale cress	nucleus	44.01	43.56
KRH43745	Soybean	nucleus	44.52	42.55
CDY54138	Canola	cytosol	21.92	40.51
AT4G19560.1	Thale cress	nucleus	31.85	40.43
Bra031514.1-P	Field mustard	cytosol	21.4	39.56
CDY24526	Canola	cytosol, nucleus, peroxisome	21.23	39.24
CDX99363	Canola	nucleus	27.05	39.21
Bra013402.1-P	Field mustard	nucleus	26.88	38.77
CDX78940	Canola	nucleus	26.88	38.77
EER97007	Sorghum	nucleus	12.16	27.63
KXG29406	Sorghum	cytosol	22.6	23.87
EES07541	Sorghum	plastid	27.05	22.67
OQU86869	Sorghum	cytosol, nucleus, plastid	12.33	22.64
KXG30252	Sorghum	nucleus	11.99	21.67

Protein Annotations

EnsemblPlants:OQU93178	EnsemblPlantsGene:SORBI_3001G495000	Gene3D:1.10.472.10	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_N
PANTHER:PTHR10026	PANTHER:PTHR10026:SF103	PFAM:PF00134	ProteinID:OQU93178	ProteinID:OQU93178.1	SEG:seg
SMART:SM00385	SUPFAM:SSF47954	UniParc:UPI0003C714FD	UniProt:A0A1Z5SB83	MapMan:13.1.1.1.9	MapMan:15.3.2.1.2

Description

hypothetical protein

Coordinates

chr1:-:76404518..76411588

Molecular Weight (calculated)

65658.4 Da

IEP (calculated)

7.872

GRAVY (calculated)

-0.859

Length

584 amino acids

Sequence
(BLAST)

001: MAMVRSDSSH HGVVDNSPNG CAQARCDEAR KLGPSWYFSR KELEENSPSR RDGIDFKKES NLRKLYCKFL QDLGMLLKMP QVTIATAMVF CHRFYLRQSL
101: AKNDRRIIAT VCLFLAGKVE ETPKPLRDVI LVSYGMIHKN DPKSSQRIKQ KEIYDKQKEL ILLGERVVLA TLGFDLNIHH AYRPLVEAIR RFNIDNKSPL
201: AQVAWNFVND GLRTSLCLQF QPHHIAAGAI CLAAKFLKVK LSLDGDKHWW QDFDVTYRQL EEISGQLLEM YEQNRTTQAQ SSQGSEAEGS SAGVCNQRSS
301: VKSEANSKEP SAHGYLQASR SQNLQHSSST SASGHHDDGH SNSDKHISGH KMLQNDNANH GGSKEKNKSG IKTDTGMDRL HHDKKFSPGH RYPVEEHQPH
401: RSDDNSNETR DGVGGLEAPV VSTSRMDAMN KIDKDKVKAA LEKRRKSKGG FASKVNLMDD DDLLERELEQ GVELAVEVEK IKQDKKQNLS DGSKHPPDLQ
501: NTDQVMENGH HVKQSLPTTA EDMGCLMDSK EQHPSPFIKQ NDVPEHKSQQ LDDTLKHQKG YDHPQLVGGP ELDGKDCKRP KLDG

Best Arabidopsis Sequence Match ( AT5G45190.1 )
(BLAST)

001: MAGVLAGECS YSESGVSSHS RNSHEKQEEV SRWYFGRKEI EENSPSRLDG IDLKKETYLR KSYCTFLQDL GMRLKVPQVT IATAIIFCHR FFFRQSHAKN
101: DRRTIATVCM FLAGKVEETP RPLKDVIFVS YEIINKKDPG ASQKIKQKEV YEQQKELILN GEKIVLSTLG FDLNVYHPYK PLVEAIKKFK VAQNALAQVA
201: WNFVNDGLRT SLCLQFKPHH IAAGAIFLAA KFLKVKLPSD GEKVWWQEFD VTPRQLEDVS NQMLELYEQN RVPASQGSEV ESSVGGGSAQ RPGSRNAVST
301: DEHVGSRQTS SVRSTHEQSN SDNHGGSSKG VLNQNNENGG GEAANVSVDN KEEIERETKE SSLHLESHPA HKDNVREAPH NSRPLVEGPG KDNSEREGGE
401: LQDDGAVHKS RNVDVGDALI SQSPKDLKLL RDKVKAKREK AKKLLGERTR KKDLMDEDDL IERELEDVQL AVEDEKTKER KVQSRPKAEN SDLMGTEHGE
501: ILDVKGEVKN TEEGEMVNNN VSPMMHSRKR KMGSPPEKQS EGKRRHNSEN GEESHKTSRG SSHHGDREHR RHSQENNHS

Arabidopsis Description

Cyclin family protein [Source:UniProtKB/TrEMBL;Acc:F4KD43]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.