Factsheet for GSMUA_Achr6P30140_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038497_P001	Maize	cytosol, extracellular, peroxisome	28.8	90.68
Zm00001d027790_P001	Maize	cytosol	38.07	71.48
EES11326	Sorghum	nucleus	68.64	71.02
Zm00001d026030_P014	Maize	nucleus	68.24	70.61
TraesCS4A01G199300.1	Wheat	nucleus	65.29	69.98
HORVU2Hr1G083340.2	Barley	nucleus	67.06	69.96
TraesCS4D01G113600.1	Wheat	nucleus	65.88	69.58
TraesCS2B01G358600.1	Wheat	nucleus	66.67	69.4
HORVU4Hr1G021250.6	Barley	nucleus	65.48	69.31
TraesCS4B01G116000.1	Wheat	nucleus	65.29	69.1
TraesCS2A01G323500.1	Wheat	nucleus	66.27	68.99
TraesCS2D01G339400.1	Wheat	nucleus	66.86	68.62
HORVU0Hr1G007890.2	Barley	cytosol, nucleus	51.08	67.98
GSMUA_Achr6P31620_001	Banana	cytosol	67.85	67.06
EER88086	Sorghum	nucleus	60.95	64.92
TraesCS4A01G199600.1	Wheat	nucleus	50.69	61.78
TraesCS4B01G115800.1	Wheat	nucleus	50.49	61.54
TraesCS4D01G113400.1	Wheat	nucleus	53.45	61.04
Zm00001d027376_P002	Maize	nucleus, plastid	66.86	60.75
Zm00001d020158_P001	Maize	nucleus	48.72	60.1
Os12t0485400-01	Rice	nucleus	60.16	56.17
TraesCS5A01G103900.2	Wheat	nucleus	57.59	55.51
HORVU5Hr1G038970.16	Barley	nucleus	58.38	54.31
TraesCS5D01G121900.1	Wheat	nucleus	59.96	54.29
TraesCS5B01G112100.2	Wheat	nucleus	60.95	53.09
GSMUA_Achr6P04070_001	Banana	nucleus	48.13	50.21
HORVU4Hr1G021220.13	Barley	cytosol	41.22	47.5
OQU93178	Sorghum	nucleus	53.45	46.4
KXG23456	Sorghum	nucleus	49.9	43.03
GSMUA_Achr3P20770_001	Banana	nucleus	34.12	41.39
GSMUA_Achr8P18640_001	Banana	nucleus	31.56	38.65
GSMUA_Achr7P02730_001	Banana	cytosol	15.19	29.28
GSMUA_Achr8P00390_001	Banana	mitochondrion	17.36	25.88
GSMUA_Achr8P06830_001	Banana	nucleus	19.92	22.7

Protein Annotations

EnsemblPlants:GSMUA_Achr6P30140_001	EnsemblPlants:GSMUA_Achr6T30140_001	EnsemblPlantsGene:GSMUA_Achr6G30140_001	Gene3D:1.10.472.10	InterPro:Cyclin-like	InterPro:Cyclin-like_sf
InterPro:Cyclin_N	PANTHER:PTHR10026	PANTHER:PTHR10026:SF103	PFAM:PF00134	SEG:seg	SMART:SM00385
SUPFAM:SSF47954	UniParc:UPI00029562F7	UniProt:M0TBF9	MapMan:13.1.1.1.9	MapMan:15.3.2.1.2	:

Description

Cyclin-T1-3 [Source:GMGC_GENE;Acc:GSMUA_Achr6G30140_001]

Coordinates

chr6:+:30200118..30211636

Molecular Weight (calculated)

57892.7 Da

IEP (calculated)

7.575

GRAVY (calculated)

-0.756

Length

507 amino acids

Sequence
(BLAST)

001: MAGDPSHHEL VEISPYRFSH DRHEEDKLPG ATWYLSRRDI EENSPSRRDG IDLKKETYLR KSYCTFLQDL GMRLKVPQVT IATAIVFCHR FFLRQSHAKN
101: DRRTIATVCM FLAGKVEETP RPLKDVILVS YEIMHKKDPA AVQRIKQREV YEQQKELILL GERLVLATLG FDLNVQHPYK PLVEAIKKFK IAQNALAQVA
201: WNFVNDGLRT SLCLQFKPHH IAAGAIFLAA KFLKVKLPSD GEKVWWQEFD VTPRQLEEIS NQMLELYEQN RPAPTAHGNE TEGSSASGAN HRAPAKAPVE
301: LEEPTTQSGY SQVSKNATLQ KTTGSRSHYG PEQEVEELAI PATDGMAETK ERIPVYNEGS KVHSPMMAAM KKIDKDKVKA ALEKRRKSRA DIAKKVDLLD
401: EDDLIERELE HGVELAVEDE RNKLKSHSWS KPTYRQEPDH IIENGYHGAE KAMENAEEGE LSVDSQDIQS LETGNQKRKA VSPPGRHFRR FDRADRDHKK
501: LRQENQV

Best Arabidopsis Sequence Match ( AT4G19600.1 )
(BLAST)

001: MAGVLAGDCS FGESGVSSYS RNSNEKQDEV ARWYFGRKEI EENSPSRLDS IDLKKETYLR KSYCTFLQDL GMRLKVPQVT IATAIIFCHR FFIRQSHARN
101: DRRTIATVCM FLAGKVEETP RPLKDVIVVS YEIIHKKDPT TAQKIKQKEV YEQQKELILN GEKIVLSTLG FDFNVYHPYK PLVEAIKKFK VAQNALAQVA
201: WNFVNDGLRT SLCLQFKPHH IAAGAIFLAA KFLKVKLPSD GEKVWWQEFD VTPRQLEDVS NQMLELYEQN RVPASQVSEV ESSVGGGSAH HVGSRPSARL
301: THEHSNSDNL GGSTKATQNR SNDNGSGEAG SVITEQKGER DTETKDSMHT ESHPAHKSRS GVEAPGEDKI EKAGAHFPED DKSRIVGTAD VTVSQSPKDI
401: KMFRDKVKAK LEAKKVQGEK TRKKDLVDED DLIERELEDV ELAVEDDKDI QNKSSMGTEH GEILDGNNLV VNTEEGEMID DVSSTMPSRK RKMESPCEKQ
501: LGEGKRRHDN SENVEEGQKT NPGGSSHSYG DREPRRHSQE R

Arabidopsis Description

CYCT1-4Cyclin-T1-4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GYM6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.