Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||
|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d038497_P001 | Maize | cytosol, extracellular, peroxisome | 30.23 | 82.61 |
| TraesCS4A01G199600.1 | Wheat | nucleus | 60.0 | 63.46 |
| TraesCS4B01G115800.1 | Wheat | nucleus | 59.55 | 62.98 |
| TraesCS4D01G113400.1 | Wheat | nucleus | 59.77 | 59.23 |
| HORVU2Hr1G083340.2 | Barley | nucleus | 53.64 | 48.56 |
| HORVU4Hr1G021250.6 | Barley | nucleus | 52.05 | 47.81 |
| Zm00001d026030_P014 | Maize | nucleus | 52.95 | 47.55 |
| EES11326 | Sorghum | nucleus | 52.73 | 47.35 |
| AT1G35440.1 | Thale cress | cytosol | 25.91 | 46.15 |
| CDX71123 | Canola | nucleus | 27.05 | 45.08 |
| CDX88692 | Canola | nucleus | 26.36 | 43.94 |
| Bra006723.1-P | Field mustard | nucleus | 26.14 | 43.56 |
| EER88086 | Sorghum | nucleus | 47.05 | 43.49 |
| GSMUA_Achr6P30140_001 | Banana | nucleus | 47.5 | 41.22 |
| Zm00001d027376_P002 | Maize | nucleus, plastid | 52.27 | 41.22 |
| CDY24526 | Canola | cytosol, nucleus, peroxisome | 28.64 | 39.87 |
| GSMUA_Achr6P31620_001 | Banana | cytosol | 46.14 | 39.57 |
| Bra031514.1-P | Field mustard | cytosol | 28.18 | 39.24 |
| CDY54138 | Canola | cytosol | 27.95 | 38.92 |
| CDX78940 | Canola | nucleus | 35.68 | 38.77 |
| Bra013402.1-P | Field mustard | nucleus | 35.68 | 38.77 |
| CDX99363 | Canola | nucleus | 35.23 | 38.46 |
| HORVU0Hr1G007890.2 | Barley | cytosol, nucleus | 32.27 | 37.27 |
| CDY26395 | Canola | nucleus | 44.55 | 37.26 |
| Bra020954.1-P | Field mustard | nucleus | 44.09 | 36.81 |
| CDX76472 | Canola | nucleus | 44.09 | 36.67 |
| AT4G19600.1 | Thale cress | nucleus | 45.0 | 36.6 |
| CDY09329 | Canola | nucleus | 44.09 | 36.53 |
| HORVU5Hr1G038970.16 | Barley | nucleus | 45.23 | 36.51 |
| CDX99359 | Canola | nucleus | 43.64 | 35.96 |
| Bra025087.1-P | Field mustard | nucleus | 45.45 | 35.27 |
| KRH50485 | Soybean | nucleus | 45.45 | 35.27 |
| KRG89442 | Soybean | nucleus | 45.45 | 35.21 |
| Bra021950.1-P | Field mustard | nucleus | 44.55 | 35.06 |
| AT4G19560.1 | Thale cress | nucleus | 36.59 | 35.0 |
| VIT_00s0125g00270.t01 | Wine grape | nucleus | 46.36 | 34.81 |
| KRG89447 | Soybean | nucleus | 44.77 | 34.74 |
| CDX82583 | Canola | nucleus | 44.77 | 34.74 |
| CDY39416 | Canola | nucleus | 45.45 | 34.54 |
| CDY65933 | Canola | nucleus | 44.55 | 34.51 |
| VIT_19s0027g01670.t01 | Wine grape | nucleus | 48.41 | 34.19 |
| AT5G45190.2 | Thale cress | nucleus | 45.0 | 33.56 |
| KRH13708 | Soybean | nucleus | 46.14 | 33.5 |
| KRH43745 | Soybean | nucleus | 46.36 | 33.39 |
| Solyc10g078180.1.1 | Tomato | nucleus | 45.68 | 32.37 |
| HORVU6Hr1G056640.2 | Barley | plastid | 5.91 | 30.59 |
| HORVU3Hr1G059980.2 | Barley | endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole | 22.27 | 25.52 |
| HORVU6Hr1G083890.3 | Barley | plastid | 13.41 | 19.47 |
| HORVU6Hr1G080430.3 | Barley | nucleus | 17.5 | 17.26 |
| HORVU6Hr1G017740.2 | Barley | nucleus | 22.95 | 11.11 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G021220.13 | EnsemblPlantsGene:HORVU4Hr1G021220 | Gene3D:1.10.472.10 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_N |
| ncoils:Coil | PANTHER:PTHR10026 | PANTHER:PTHR10026:SF103 | PFAM:PF00134 | SEG:seg | SMART:SM00385 |
| SUPFAM:SSF47954 | UniParc:UPI000B47F9D0 | UniProt:A0A287NI05 | MapMan:13.1.1.1.9 | MapMan:15.3.2.1.2 | : |
Description
No Description!
Coordinates
chrchr4H:+:107422936..107436241
Molecular Weight (calculated)
33105.1 Da
IEP (calculated)
9.256
GRAVY (calculated)
-0.205
Length
440 amino acids
Sequence
(BLAST)
(BLAST)
001: MDIMQTSDSS QYGVVENSPY RFPYDKRVED GNLGASWYFS RKEIEENSLS RRDGISLKKE SYLRKSYCTF LQELGVRLKV PPVTIATAIV FCHRFFLRQS
101: HAKNDRLTIA TVCMFLAGKV EETPIPLKDV ILISYEIIHK KDPGAVARIK KKEVYEQQKK LLLIGERAVL VTLDFDFNVH HPYKPLVEAI KKLKIAQKEL
201: AQVAWSFVND GLCTSLCLQF KPQHIAAGAI FLAAKFLKVK LPADGEKVWW QDFDVTPWQL EXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
301: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
401: XXXXXXXXXX XXXTKDPPRE ETKEKGDVWH GHLPNSILNR
101: HAKNDRLTIA TVCMFLAGKV EETPIPLKDV ILISYEIIHK KDPGAVARIK KKEVYEQQKK LLLIGERAVL VTLDFDFNVH HPYKPLVEAI KKLKIAQKEL
201: AQVAWSFVND GLCTSLCLQF KPQHIAAGAI FLAAKFLKVK LPADGEKVWW QDFDVTPWQL EXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
301: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
401: XXXXXXXXXX XXXTKDPPRE ETKEKGDVWH GHLPNSILNR
001: MDEALNENAS GSESDASSVA SNLHDDEIIP WFFSREEIER NSPSRRDGID LKTETRLRDS YCTFLEILGE RLKVPQVTIA TAIFFCHRFF LRQSHAKNDR
101: QTIATVCMLL AGKVEETPVT LEDVIIASYE RIHKKDLAGA QRKEVYDQQK ELVLIGEELV LSTLNFDLCI SHPYKPLVEA IKKYMVEDAK TQLAQFAWNF
201: VNDCLRTTLC LQYQPHHIAA GAILLAAELP TVDLQSYREV LCQEFDITPC QLEDIRGQIL ELYERIPTSQ ESKVESSGGV AVVHQPISRD MASTEKCPSS
301: DIEGGSSQVN LSQSDDHSVH DGSRSEGIGE VNSESEAQKN LQDHSVGNIM VEKSDDVGVV QLKKDLQLHQ EEVESKQEKD KKSFEKDITK IDLMDEKDLT
401: ESEVEDEINK TMQTGRQIFM KVEDPDDNMT VEHSEIRNAN NSGVDDELVA DTCLINDSDL
101: QTIATVCMLL AGKVEETPVT LEDVIIASYE RIHKKDLAGA QRKEVYDQQK ELVLIGEELV LSTLNFDLCI SHPYKPLVEA IKKYMVEDAK TQLAQFAWNF
201: VNDCLRTTLC LQYQPHHIAA GAILLAAELP TVDLQSYREV LCQEFDITPC QLEDIRGQIL ELYERIPTSQ ESKVESSGGV AVVHQPISRD MASTEKCPSS
301: DIEGGSSQVN LSQSDDHSVH DGSRSEGIGE VNSESEAQKN LQDHSVGNIM VEKSDDVGVV QLKKDLQLHQ EEVESKQEKD KKSFEKDITK IDLMDEKDLT
401: ESEVEDEINK TMQTGRQIFM KVEDPDDNMT VEHSEIRNAN NSGVDDELVA DTCLINDSDL
Arabidopsis Description
CYCT1-2Cyclin-T1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q56YF8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.