Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G096600.1 | Wheat | nucleus | 62.49 | 80.57 |
| TraesCS6B01G125000.1 | Wheat | nucleus | 66.34 | 79.97 |
| TraesCS6D01G087700.1 | Wheat | nucleus | 67.99 | 73.92 |
| Os02t0133000-00 | Rice | extracellular | 24.64 | 50.22 |
| KXG29406 | Sorghum | cytosol | 26.29 | 43.22 |
| Zm00001d015164_P001 | Maize | cytosol | 24.53 | 40.99 |
| GSMUA_Achr3P20770_001 | Banana | nucleus | 16.17 | 35.17 |
| GSMUA_Achr8P18640_001 | Banana | nucleus | 15.95 | 35.02 |
| VIT_18s0001g12980.t01 | Wine grape | nucleus | 15.29 | 31.45 |
| HORVU6Hr1G056640.2 | Barley | plastid | 2.86 | 30.59 |
| Bra030056.1-P | Field mustard | cytosol | 10.34 | 30.03 |
| CDY03933 | Canola | cytosol | 10.34 | 30.03 |
| CDY60279 | Canola | cytosol | 10.23 | 29.71 |
| AT1G27630.1 | Thale cress | cytosol | 10.23 | 29.34 |
| HORVU0Hr1G007890.2 | Barley | cytosol, nucleus | 12.1 | 28.87 |
| Solyc07g032480.2.1 | Tomato | nucleus | 13.09 | 28.81 |
| PGSC0003DMT400044127 | Potato | nucleus | 12.98 | 27.83 |
| Bra010927.1-P | Field mustard | nucleus | 9.79 | 27.81 |
| CDY11776 | Canola | cytosol | 9.79 | 27.81 |
| CDX90099 | Canola | nucleus | 9.79 | 27.64 |
| HORVU2Hr1G083340.2 | Barley | nucleus | 14.63 | 27.37 |
| HORVU4Hr1G021250.6 | Barley | nucleus | 14.19 | 26.93 |
| HORVU5Hr1G038970.16 | Barley | nucleus | 13.86 | 23.12 |
| HORVU4Hr1G021220.13 | Barley | cytosol | 11.11 | 22.95 |
| HORVU6Hr1G080430.3 | Barley | nucleus | 9.57 | 19.51 |
| HORVU3Hr1G059980.2 | Barley | endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole | 7.59 | 17.97 |
| HORVU6Hr1G083890.3 | Barley | plastid | 5.06 | 15.18 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G017740.2 | EnsemblPlantsGene:HORVU6Hr1G017740 | Gene3D:1.10.472.10 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_N |
| PANTHER:PTHR10026 | PANTHER:PTHR10026:SF76 | PFAM:PF00134 | SEG:seg | SMART:SM00385 | SUPFAM:SSF47954 |
| UniParc:UPI000B470E04 | UniProt:A0A287TGN1 | MapMan:13.1.1.1.9 | : | : | : |
Description
No Description!
Coordinates
chrchr6H:-:42584362..42588593
Molecular Weight (calculated)
97374.6 Da
IEP (calculated)
11.061
GRAVY (calculated)
-0.554
Length
909 amino acids
Sequence
(BLAST)
(BLAST)
001: XXXXXXXXXX XXXXXXXXXV GRRLGMPQIT IATGIVLCHR FYLHQSLARN EWQTVATACI FLASKIEDTP CQLERAVIVA HETMFKRQPD AARRIKQKEV
101: LEKRKDLILT GEALLLSTIR FDFNIQHPYE PLKLALKNLE ISQKEVKQAA INLINDTIRT TLVVQFKPHY IAAGSLFLAA KFHDVKLPSE NGKLWWHQFD
201: VAPKQLQAAI QQMRVIFVKR NPHPAGPAIQ PIPAPAPVEK QLTVSFPRPA PKEKQQTVSF LRPALVEEHQ TVSFPKPAPV EEQQTSLKPA PVEKQQTVSF
301: LKPAPVENQQ TVSFLKPALV EKEQTVSSPK PALAEKQLTA SSLKPAPLEK QQSVNSLKPA PVEKQQTVSF LEPALVEKEQ TVSSPKPALA EKQLSASSLK
401: PAPLEKQQSV NSLKPAPVEK QQAVSFLKPA PVENQQTVSF LKPALVEKEQ TVSFQKPALA EKQLPTSSSK PAPVEKQLPT SSSKPAPVEK QQSVNSPKPA
501: PVEKQQSVNS PKPAPAEKQL IISFPKPALV EKQQTASSPK PAPVEKQQTV NSLKPAPVGK QQIISFPKPV LKYRYSRRDL RNTTVPIVTP TPTLVKKQQK
601: ISTPDGPVSH AFSPRGVLNG PTSAPTITPN PMKKQQAIST PDSVLRQAHP SVGGVKRTRS PAQVRTLVKK QKIISSPDSV VRHARPSVVV VRPTGSPVRA
701: RTPVKKSQII RAQDSVPRHT RPSVGGERRP STAPAPASAP APASAPVRKQ QTISTPDSVP RHTRPSVGGE KRPSTAPAPA PASALVRKQQ TISTPDSVPR
801: HTDPSRNEDS KPLRMHVDHS SRTAKDGRLE KPSFQAALNA NHGHHVGSGP KDVNMTRVPN LVGQKRRIQE AAREPPAPAD RCAGDASRRP QLRSLIVAPS
901: SWEKQKIDV
101: LEKRKDLILT GEALLLSTIR FDFNIQHPYE PLKLALKNLE ISQKEVKQAA INLINDTIRT TLVVQFKPHY IAAGSLFLAA KFHDVKLPSE NGKLWWHQFD
201: VAPKQLQAAI QQMRVIFVKR NPHPAGPAIQ PIPAPAPVEK QLTVSFPRPA PKEKQQTVSF LRPALVEEHQ TVSFPKPAPV EEQQTSLKPA PVEKQQTVSF
301: LKPAPVENQQ TVSFLKPALV EKEQTVSSPK PALAEKQLTA SSLKPAPLEK QQSVNSLKPA PVEKQQTVSF LEPALVEKEQ TVSSPKPALA EKQLSASSLK
401: PAPLEKQQSV NSLKPAPVEK QQAVSFLKPA PVENQQTVSF LKPALVEKEQ TVSFQKPALA EKQLPTSSSK PAPVEKQLPT SSSKPAPVEK QQSVNSPKPA
501: PVEKQQSVNS PKPAPAEKQL IISFPKPALV EKQQTASSPK PAPVEKQQTV NSLKPAPVGK QQIISFPKPV LKYRYSRRDL RNTTVPIVTP TPTLVKKQQK
601: ISTPDGPVSH AFSPRGVLNG PTSAPTITPN PMKKQQAIST PDSVLRQAHP SVGGVKRTRS PAQVRTLVKK QKIISSPDSV VRHARPSVVV VRPTGSPVRA
701: RTPVKKSQII RAQDSVPRHT RPSVGGERRP STAPAPASAP APASAPVRKQ QTISTPDSVP RHTRPSVGGE KRPSTAPAPA PASALVRKQQ TISTPDSVPR
801: HTDPSRNEDS KPLRMHVDHS SRTAKDGRLE KPSFQAALNA NHGHHVGSGP KDVNMTRVPN LVGQKRRIQE AAREPPAPAD RCAGDASRRP QLRSLIVAPS
901: SWEKQKIDV
001: MGEEHPRKRS RQHFEAEARN VSLFESPQCE TSKWYFSREE IERFSPSRKD GIDLVKESFL RSSYCTFLQR LGMKLHVSQV TISCAMVMCH RFYMRQSHAK
101: NDWQTIATSS LFLACKAEDE PCQLSSVVVA SYEIIYEWDP SASIRIHQTE CYHEFKEIIL SGESLLLSTS AFHLDIELPY KPLAAALNRL NAWPDLATAA
201: WNFVHDWIRT TLCLQYKPHV IATATVHLAA TFQNAKVGSR RDWWLEFGVT TKLLKEVIQE MCTLIEVDRR RNMPPPPPPP RRELSWAIPA AVKPVHMARA
301: YPFHSYPLQS YRQAGIW
101: NDWQTIATSS LFLACKAEDE PCQLSSVVVA SYEIIYEWDP SASIRIHQTE CYHEFKEIIL SGESLLLSTS AFHLDIELPY KPLAAALNRL NAWPDLATAA
201: WNFVHDWIRT TLCLQYKPHV IATATVHLAA TFQNAKVGSR RDWWLEFGVT TKLLKEVIQE MCTLIEVDRR RNMPPPPPPP RRELSWAIPA AVKPVHMARA
301: YPFHSYPLQS YRQAGIW
Arabidopsis Description
CYCT1-3Cyclin-T1-3 [Source:UniProtKB/Swiss-Prot;Acc:Q8LBC0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.