Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY60279 | Canola | cytosol | 97.44 | 97.44 |
| Bra030056.1-P | Field mustard | cytosol | 96.17 | 96.17 |
| AT1G27630.1 | Thale cress | cytosol | 88.5 | 87.38 |
| CDY11776 | Canola | cytosol | 88.18 | 86.25 |
| CDX90099 | Canola | nucleus | 88.18 | 85.71 |
| CDX71123 | Canola | nucleus | 30.99 | 36.74 |
| CDX88692 | Canola | nucleus | 30.99 | 36.74 |
| Solyc07g032480.2.1 | Tomato | nucleus | 43.77 | 33.17 |
| VIT_18s0001g12980.t01 | Wine grape | nucleus | 45.69 | 32.35 |
| PGSC0003DMT400044127 | Potato | nucleus | 43.77 | 32.31 |
| CDY54138 | Canola | cytosol | 31.31 | 31.01 |
| CDY24526 | Canola | cytosol, nucleus, peroxisome | 31.31 | 31.01 |
| GSMUA_Achr8P18640_001 | Banana | nucleus | 40.58 | 30.68 |
| GSMUA_Achr3P20770_001 | Banana | nucleus | 39.94 | 29.9 |
| CDX78940 | Canola | nucleus | 35.46 | 27.41 |
| Os02t0133000-00 | Rice | extracellular | 38.02 | 26.68 |
| CDX99363 | Canola | nucleus | 34.19 | 26.55 |
| CDY26395 | Canola | nucleus | 43.77 | 26.05 |
| CDX76472 | Canola | nucleus | 41.85 | 24.76 |
| CDY09329 | Canola | nucleus | 41.85 | 24.67 |
| CDY65933 | Canola | nucleus | 43.77 | 24.12 |
| CDX82583 | Canola | nucleus | 43.13 | 23.81 |
| CDX99359 | Canola | nucleus | 40.58 | 23.78 |
| CDY39416 | Canola | nucleus | 43.13 | 23.32 |
| CDX86291 | Canola | cytosol | 17.57 | 21.83 |
| CDX85352 | Canola | cytosol | 17.25 | 21.43 |
| KXG29406 | Sorghum | cytosol | 37.7 | 21.34 |
| Zm00001d015164_P001 | Maize | cytosol | 37.06 | 21.32 |
| CDY51053 | Canola | cytosol | 16.93 | 20.95 |
| CDY69301 | Canola | cytosol | 16.93 | 20.95 |
| CDY66082 | Canola | cytosol | 16.61 | 20.63 |
| CDY51052 | Canola | cytosol | 16.29 | 20.32 |
| CDY05665 | Canola | endoplasmic reticulum, extracellular | 7.03 | 20.18 |
| Os02t0438200-01 | Rice | nucleus | 37.38 | 18.57 |
| Zm00001d017392_P009 | Maize | cytosol | 38.02 | 18.14 |
| Zm00001d051291_P003 | Maize | cytosol | 38.02 | 17.68 |
| CDY51595 | Canola | nucleus | 23.32 | 17.68 |
| CDY03883 | Canola | nucleus | 23.32 | 17.51 |
| EES07541 | Sorghum | plastid | 38.34 | 17.22 |
| TraesCS6A01G096600.1 | Wheat | nucleus | 37.38 | 16.6 |
| TraesCS6B01G125000.1 | Wheat | nucleus | 37.38 | 15.52 |
| TraesCS6D01G087700.1 | Wheat | nucleus | 36.42 | 13.64 |
| HORVU6Hr1G017740.2 | Barley | nucleus | 30.03 | 10.34 |
| CDY27590 | Canola | cytosol | 19.81 | 9.97 |
| CDX84949 | Canola | cytosol | 6.07 | 5.41 |
Protein Annotations
| EnsemblPlants:CDY03933 | EnsemblPlantsGene:GSBRNA2T00117435001 | Gene3D:1.10.472.10 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_N |
| PANTHER:PTHR10026 | PANTHER:PTHR10026:SF77 | PFAM:PF00134 | PIRSF:PIRSF028758 | ProteinID:CDY03933 | ProteinID:CDY03933.1 |
| SMART:SM00385 | SUPFAM:SSF47954 | UniParc:UPI0004EE13DF | MapMan:13.1.1.1.9 | : | : |
Description
BnaC07g11580D
Coordinates
chrLK031947:+:872820..875387
Molecular Weight (calculated)
36599.0 Da
IEP (calculated)
8.224
GRAVY (calculated)
-0.361
Length
313 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEEHQRKRS RQHYEAEEAR HLSLRECETS KWYFNREEIE RSSPSRKDGI DLPKESFLRS SYCSFLQRLG MQLHVSQVTI GCAMVMCHRF YMRQSHAKND
101: WQTIATASLF LACKAEDEPC QLSNVVVASY EIIFEWDPSA SIRIHQTECY HEFKEIILAG ERLLLDTSAF HLLDVELPYK PLAAALNRLN AWPDLATAAW
201: NFVHDWLRTT LCLQYKPHVI ATATVHLAAT FQNAKVGSRR DWWLEFGVTT KLLKEVIQEM YMLIEVNRRR AMPPPRREVA WAVPTVIKPP VHFARGYPFH
301: SYPMQSYRQP GIW
101: WQTIATASLF LACKAEDEPC QLSNVVVASY EIIFEWDPSA SIRIHQTECY HEFKEIILAG ERLLLDTSAF HLLDVELPYK PLAAALNRLN AWPDLATAAW
201: NFVHDWLRTT LCLQYKPHVI ATATVHLAAT FQNAKVGSRR DWWLEFGVTT KLLKEVIQEM YMLIEVNRRR AMPPPRREVA WAVPTVIKPP VHFARGYPFH
301: SYPMQSYRQP GIW
001: MGEEHPRKRS RQHFEAEARN VSLFESPQCE TSKWYFSREE IERFSPSRKD GIDLVKESFL RSSYCTFLQR LGMKLHVSQV TISCAMVMCH RFYMRQSHAK
101: NDWQTIATSS LFLACKAEDE PCQLSSVVVA SYEIIYEWDP SASIRIHQTE CYHEFKEIIL SGESLLLSTS AFHLDIELPY KPLAAALNRL NAWPDLATAA
201: WNFVHDWIRT TLCLQYKPHV IATATVHLAA TFQNAKVGSR RDWWLEFGVT TKLLKEVIQE MCTLIEVDRR RNMPPPPPPP RRELSWAIPA AVKPVHMARA
301: YPFHSYPLQS YRQAGIW
101: NDWQTIATSS LFLACKAEDE PCQLSSVVVA SYEIIYEWDP SASIRIHQTE CYHEFKEIIL SGESLLLSTS AFHLDIELPY KPLAAALNRL NAWPDLATAA
201: WNFVHDWIRT TLCLQYKPHV IATATVHLAA TFQNAKVGSR RDWWLEFGVT TKLLKEVIQE MCTLIEVDRR RNMPPPPPPP RRELSWAIPA AVKPVHMARA
301: YPFHSYPLQS YRQAGIW
Arabidopsis Description
CYCT1-3Cyclin-T1-3 [Source:UniProtKB/Swiss-Prot;Acc:Q8LBC0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.