Factsheet for Zm00001d017392_P009

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d012392_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27630.1	Zm00001d012392_P001	AT5G10270.1	12678503
AT1G27630.1	Zm00001d012392_P001	AT5G10270.1	20706207
AT1G27630.1	Zm00001d012392_P001	AT5G64960.1	12678503
AT1G27630.1	Zm00001d012392_P001	AT5G64960.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d051291_P003	Maize	cytosol	86.28	84.1
Os02t0438200-01	Rice	nucleus	56.55	58.89
GSMUA_Achr3P20770_001	Banana	nucleus	33.99	53.35
Zm00001d038497_P001	Maize	cytosol, extracellular, peroxisome	12.8	52.17
Zm00001d027790_P001	Maize	cytosol	19.51	47.41
GSMUA_Achr8P18640_001	Banana	nucleus	29.88	47.34
Solyc07g032480.2.1	Tomato	nucleus	25.15	39.95
PGSC0003DMT400044127	Potato	nucleus	25.61	39.62
Bra030056.1-P	Field mustard	cytosol	18.29	38.34
CDY60279	Canola	cytosol	18.29	38.34
CDY03933	Canola	cytosol	18.14	38.02
VIT_18s0001g12980.t01	Wine grape	nucleus	25.61	38.01
AT1G27630.1	Thale cress	cytosol	17.99	37.22
Bra010927.1-P	Field mustard	nucleus	17.84	36.56
CDX90099	Canola	nucleus	17.84	36.34
CDY11776	Canola	cytosol	17.68	36.25
Zm00001d020158_P001	Maize	nucleus	22.1	35.28
Zm00001d033021_P001	Maize	cytosol	9.76	34.97
Zm00001d026030_P014	Maize	nucleus	24.24	32.45
Zm00001d015164_P001	Maize	cytosol	25.46	30.7
Zm00001d019681_P002	Maize	nucleus	9.45	29.11
Zm00001d027376_P002	Maize	nucleus, plastid	24.09	28.32
Zm00001d040936_P002	Maize	plastid	10.67	21.34
Zm00001d021031_P002	Maize	endoplasmic reticulum, vacuole	9.76	20.32
Zm00001d019684_P002	Maize	mitochondrion	6.4	15.05
Zm00001d033023_P001	Maize	cytosol	4.88	13.01

Protein Annotations

EnsemblPlants:Zm00001d017392_P009	EnsemblPlants:Zm00001d017392_T009	EnsemblPlantsGene:Zm00001d017392	EntrezGene:100193479	Gene3D:1.10.472.10	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_N	PANTHER:PTHR10026
PANTHER:PTHR10026:SF102	PFAM:PF00134	ProteinID:AQK73093.1	SEG:seg	SUPFAM:SSF47954	TMHMM:TMhelix
UniParc:UPI0008428168	UniProt:A0A1D6HEM2	MapMan:13.1.1.1.9	:	:	:

Description

Cyclin-T1-3

Coordinates

chr5:-:194378671..194382557

Molecular Weight (calculated)

73571.7 Da

IEP (calculated)

4.960

GRAVY (calculated)

-0.284

Length

656 amino acids

Sequence
(BLAST)

001: MDGAPKILEK SSHECMYSWY FTREELEKFS PSRKDGITEN KESEIRHLYC SFIRDVGIRL KLPQMTLATA IMLCHRFYLH QSLAKNGWQV RLERLFCCGS
101: DGYLLMSMKS DKGAEFPCQA FVDNMLSMFL IVPFIITLFQ TIATVCVFLA SKVEDTPCPL DYVVRVSYET MYRRDTAAAQ RIRQKDVFEK QKALILIGER
201: LLLTTIRFDF NIQHPYRPLL DAMQNLGINK KEVKQVAWNF VNDWLKTTLC LQYKPQYIAA GSLYLAARLH DIKLPLHGAH VWWHQFGVAP KPLEAVIHQM
301: MELAAVNKSN PVRPNLVKPK ETLCEAKLSL SNSPDSVLNQ SSLLISSSSP DIGETSDQVQ VDSCQYLISS HTGDCRVSCP DNSSLDTSGK AHDEERLDQA
401: LITKHDSGMM PSTSNQTSLD ATVGTESSAE YMKQDVSHCD DFNIRVNDQS LNQALRNQHG DAVPLPDMVS LDAKVDKESS WCLEPLIANF DCCIDSVNVD
501: SLCTDQRLAD VASGPTADVP SVLLAKENSD PLSAKLENID VARIKGLLMK RKSRREIQNQ AIASDGLSEE AWIERELESG IVTKQEANCA AISDELSDEA
601: WIERELESGI VTGPTNEQAI TFDGLSENDW IERELESGII IEPAPAIKKR KLESSC

Best Arabidopsis Sequence Match ( AT1G27630.1 )
(BLAST)

001: MGEEHPRKRS RQHFEAEARN VSLFESPQCE TSKWYFSREE IERFSPSRKD GIDLVKESFL RSSYCTFLQR LGMKLHVSQV TISCAMVMCH RFYMRQSHAK
101: NDWQTIATSS LFLACKAEDE PCQLSSVVVA SYEIIYEWDP SASIRIHQTE CYHEFKEIIL SGESLLLSTS AFHLDIELPY KPLAAALNRL NAWPDLATAA
201: WNFVHDWIRT TLCLQYKPHV IATATVHLAA TFQNAKVGSR RDWWLEFGVT TKLLKEVIQE MCTLIEVDRR RNMPPPPPPP RRELSWAIPA AVKPVHMARA
301: YPFHSYPLQS YRQAGIW

Arabidopsis Description

CYCT1-3Cyclin-T1-3 [Source:UniProtKB/Swiss-Prot;Acc:Q8LBC0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.