Factsheet for Os02t0438200-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0201000-01
Os08t0453800-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27630.1	Os01t0201000-01	AT5G10270.1	12678503
AT1G27630.1	Os08t0453800-00	AT5G10270.1	12678503
AT1G27630.1	Os01t0201000-01	AT5G10270.1	20706207
AT1G27630.1	Os08t0453800-00	AT5G10270.1	20706207
AT1G27630.1	Os01t0201000-01	AT5G64960.1	12678503
AT1G27630.1	Os08t0453800-00	AT5G64960.1	12678503
AT1G27630.1	Os01t0201000-01	AT5G64960.1	20706207
AT1G27630.1	Os08t0453800-00	AT5G64960.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017392_P009	Maize	cytosol	58.89	56.55
Zm00001d051291_P003	Maize	cytosol	59.84	56.02
EES07541	Sorghum	plastid	60.79	54.95
GSMUA_Achr3P20770_001	Banana	nucleus	34.6	52.15
GSMUA_Achr8P18640_001	Banana	nucleus	30.0	45.65
Solyc07g032480.2.1	Tomato	nucleus	26.35	40.19
Os02t0133000-00	Rice	extracellular	28.1	39.69
PGSC0003DMT400044127	Potato	nucleus	26.35	39.15
Bra030056.1-P	Field mustard	cytosol	18.73	37.7
CDY60279	Canola	cytosol	18.57	37.38
CDY03933	Canola	cytosol	18.57	37.38
VIT_18s0001g12980.t01	Wine grape	nucleus	25.87	36.88
AT1G27630.1	Thale cress	cytosol	18.41	36.59
CDY11776	Canola	cytosol	18.25	35.94
Bra010927.1-P	Field mustard	nucleus	18.25	35.94
CDX90099	Canola	nucleus	18.25	35.71
Os12t0485400-01	Rice	nucleus	26.19	30.39
Os01t0377500-01	Rice	nucleus	16.67	24.59
Os09t0504400-01	Rice	nucleus	8.89	21.79

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.9	EntrezGene:4329229	EMBL:AK102728	EMBL:AK107537	ProteinID:BAD17159.1
ProteinID:BAD17160.1	ProteinID:BAF08654.1	ProteinID:BAS78472.1	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_N
ProteinID:EEE56895.1	GO:GO:0000307	GO:GO:0003674	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006464	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016538	GO:GO:0019538	GO:GO:0030234	GO:GO:0045737
GO:GO:0045944	GO:GO:1901409	EnsemblPlantsGene:Os02g0438200	EnsemblPlants:Os02t0438200-01	PFAM:PF00134	PANTHER:PTHR10026
PANTHER:PTHR10026:SF102	UniProt:Q6Z7H3	SMART:SM00385	SUPFAM:SSF47954	UniParc:UPI000035AE1B	RefSeq:XP_015626103.1
RefSeq:XP_015626104.1	RefSeq:XP_015626105.1	SEG:seg	:	:	:

Description

CYCLIN-T1-1Transcription regulator cyclin domain containing protein. (Os02t0438200-01);Similar to Cyclin-T1-2. (Os02t0438200-02)

Coordinates

chr2:+:14006914..14018122

Molecular Weight (calculated)

71038.9 Da

IEP (calculated)

6.961

GRAVY (calculated)

-0.426

Length

630 amino acids

Sequence
(BLAST)

001: MDGESQTSKL SCEHMYSWYF TREELEKFSP SRKDGITEIM ESEIRQLYCS FIRDVGIRLK LPQMTIATAI MFCHRFYLYQ SLAKNGWQTI ATVCIFLASK
101: VEDTPCPLDQ VIRVAYGTMY RRDPATARRI HQKDVFEKQK ALILTGERLV LTTVRFDFNI QHPYRPLLDA MEKLGISQKE VKQVAWNFVN DWLKTTLCLQ
201: YKPQYIAAGS LYLAAKFQNV KLPVHGGHVW WHQFDVAPKP LEAVLQQMRE MVHMKAKLFA HPSPAKQKEV LFEGMLLISN SPDSVLTQSS LSVSSSSPEI
301: GDPNDHLQVD SSQDIVHIED RSKSYPERNL SNLTADMNNP GKTHNKESLD QALKIKHGGL ISCNQQIPLD AIAKIDSSTA KCVEQNIGIC CSSSNTFNGK
401: ILNPFSISQR SGDKTKLCSE GGSSLTDVDS KSTQSVEPPT TICNHTSDSL NVDSLCSDQR LANSTAGTTE KASFVLPVQI KVDHLCVERK KVDVARIKDL
501: LMKRKRRRER QGRCIPSVDL SEEAWIEREL ESGIVFKKVD HVVASYDLSD EGWIERELES GIVIGQKNDQ PVSLDGLTED DWIERELESG IIVEPGPAGK
601: KLKSKLLSEG HEIMNSRWEI NGKSMQNQVT

Best Arabidopsis Sequence Match ( AT4G19600.1 )
(BLAST)

001: MAGVLAGDCS FGESGVSSYS RNSNEKQDEV ARWYFGRKEI EENSPSRLDS IDLKKETYLR KSYCTFLQDL GMRLKVPQVT IATAIIFCHR FFIRQSHARN
101: DRRTIATVCM FLAGKVEETP RPLKDVIVVS YEIIHKKDPT TAQKIKQKEV YEQQKELILN GEKIVLSTLG FDFNVYHPYK PLVEAIKKFK VAQNALAQVA
201: WNFVNDGLRT SLCLQFKPHH IAAGAIFLAA KFLKVKLPSD GEKVWWQEFD VTPRQLEDVS NQMLELYEQN RVPASQVSEV ESSVGGGSAH HVGSRPSARL
301: THEHSNSDNL GGSTKATQNR SNDNGSGEAG SVITEQKGER DTETKDSMHT ESHPAHKSRS GVEAPGEDKI EKAGAHFPED DKSRIVGTAD VTVSQSPKDI
401: KMFRDKVKAK LEAKKVQGEK TRKKDLVDED DLIERELEDV ELAVEDDKDI QNKSSMGTEH GEILDGNNLV VNTEEGEMID DVSSTMPSRK RKMESPCEKQ
501: LGEGKRRHDN SENVEEGQKT NPGGSSHSYG DREPRRHSQE R

Arabidopsis Description

CYCT1-4Cyclin-T1-4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GYM6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.