Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
Bra009045.1-P | |
Bra031892.1-P |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT1G27630.1 | Bra009045.1-P | AT5G10270.1 | 12678503 |
AT1G27630.1 | Bra009045.1-P | AT5G10270.1 | 20706207 |
AT1G27630.1 | Bra031892.1-P | AT5G64960.1 | 12678503 |
AT1G27630.1 | Bra031892.1-P | AT5G64960.1 | 20706207 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY60279 | Canola | cytosol | 96.49 | 96.49 |
CDY03933 | Canola | cytosol | 96.17 | 96.17 |
AT1G27630.1 | Thale cress | cytosol | 88.82 | 87.7 |
Bra010927.1-P | Field mustard | nucleus | 88.18 | 86.25 |
Bra006723.1-P | Field mustard | nucleus | 30.99 | 36.74 |
Solyc07g032480.2.1 | Tomato | nucleus | 43.77 | 33.17 |
VIT_18s0001g12980.t01 | Wine grape | nucleus | 46.01 | 32.58 |
PGSC0003DMT400044127 | Potato | nucleus | 43.77 | 32.31 |
Bra031514.1-P | Field mustard | cytosol | 31.63 | 31.33 |
GSMUA_Achr8P18640_001 | Banana | nucleus | 40.58 | 30.68 |
GSMUA_Achr3P20770_001 | Banana | nucleus | 40.26 | 30.14 |
Bra013402.1-P | Field mustard | nucleus | 35.14 | 27.16 |
Os02t0133000-00 | Rice | extracellular | 37.38 | 26.23 |
Bra020954.1-P | Field mustard | nucleus | 41.53 | 24.67 |
Bra021950.1-P | Field mustard | nucleus | 43.45 | 24.33 |
Bra025087.1-P | Field mustard | nucleus | 42.81 | 23.63 |
Bra037473.1-P | Field mustard | mitochondrion | 15.65 | 23.45 |
Bra020686.1-P | Field mustard | cytosol | 17.25 | 21.34 |
KXG29406 | Sorghum | cytosol | 37.38 | 21.16 |
Zm00001d015164_P001 | Maize | cytosol | 36.74 | 21.14 |
Bra020685.1-P | Field mustard | cytosol | 12.46 | 20.0 |
Os02t0438200-01 | Rice | nucleus | 37.7 | 18.73 |
Zm00001d017392_P009 | Maize | cytosol | 38.34 | 18.29 |
Bra012508.1-P | Field mustard | nucleus | 23.64 | 17.92 |
Zm00001d051291_P003 | Maize | cytosol | 38.34 | 17.83 |
EES07541 | Sorghum | plastid | 38.66 | 17.36 |
TraesCS6A01G096600.1 | Wheat | nucleus | 37.7 | 16.74 |
TraesCS6B01G125000.1 | Wheat | nucleus | 37.7 | 15.65 |
TraesCS6D01G087700.1 | Wheat | nucleus | 36.74 | 13.76 |
HORVU6Hr1G017740.2 | Barley | nucleus | 30.03 | 10.34 |
Bra032800.1-P | Field mustard | cytosol | 19.81 | 9.97 |
Protein Annotations
EnsemblPlants:Bra030056.1 | EnsemblPlants:Bra030056.1-P | EnsemblPlantsGene:Bra030056 | Gene3D:1.10.472.10 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf |
InterPro:Cyclin_N | PANTHER:PTHR10026 | PANTHER:PTHR10026:SF77 | PFAM:PF00134 | PIRSF:PIRSF028758 | SMART:SM00385 |
SUPFAM:SSF47954 | UniParc:UPI0002541141 | UniProt:M4EMN6 | MapMan:13.1.1.1.9 | : | : |
Description
AT1G27630 (E=6e-161) CYCT1;3 | CYCT1;3 (CYCLIN T 1;3); cyclin-dependent protein kinase
Coordinates
chrA07:-:6924966..6927228
Molecular Weight (calculated)
36470.8 Da
IEP (calculated)
8.035
GRAVY (calculated)
-0.294
Length
313 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEEHPRKRS RQHFEAEEAR HLSLRECETS KWYFSREEIE RFSPSRKDGI DLPKESFLRS SYCSFLQRLG MQLHVSQVTI GCAMVMCHRF YMRQSLAKND
101: WQTIATASLF LACKAEDEPC QLSNVVVASY EIIFEWDPSA SVRIHQTECY HEFKEIILAG ERLLLDTSAF HLLDVELPYK TLAAALNRLN AWPDLATAAW
201: NFVHDWLRTT LCLQYKPHVI ATATVHLAAT FQNAKVGSRR DWWLEFGVTT KLLKEVIQEM YMLIEVNRRR ALPPPRREVA WAIPTAINPP VHLARGYPFH
301: SYPMQSYRQP GIW
101: WQTIATASLF LACKAEDEPC QLSNVVVASY EIIFEWDPSA SVRIHQTECY HEFKEIILAG ERLLLDTSAF HLLDVELPYK TLAAALNRLN AWPDLATAAW
201: NFVHDWLRTT LCLQYKPHVI ATATVHLAAT FQNAKVGSRR DWWLEFGVTT KLLKEVIQEM YMLIEVNRRR ALPPPRREVA WAIPTAINPP VHLARGYPFH
301: SYPMQSYRQP GIW
001: MGEEHPRKRS RQHFEAEARN VSLFESPQCE TSKWYFSREE IERFSPSRKD GIDLVKESFL RSSYCTFLQR LGMKLHVSQV TISCAMVMCH RFYMRQSHAK
101: NDWQTIATSS LFLACKAEDE PCQLSSVVVA SYEIIYEWDP SASIRIHQTE CYHEFKEIIL SGESLLLSTS AFHLDIELPY KPLAAALNRL NAWPDLATAA
201: WNFVHDWIRT TLCLQYKPHV IATATVHLAA TFQNAKVGSR RDWWLEFGVT TKLLKEVIQE MCTLIEVDRR RNMPPPPPPP RRELSWAIPA AVKPVHMARA
301: YPFHSYPLQS YRQAGIW
101: NDWQTIATSS LFLACKAEDE PCQLSSVVVA SYEIIYEWDP SASIRIHQTE CYHEFKEIIL SGESLLLSTS AFHLDIELPY KPLAAALNRL NAWPDLATAA
201: WNFVHDWIRT TLCLQYKPHV IATATVHLAA TFQNAKVGSR RDWWLEFGVT TKLLKEVIQE MCTLIEVDRR RNMPPPPPPP RRELSWAIPA AVKPVHMARA
301: YPFHSYPLQS YRQAGIW
Arabidopsis Description
CYCT1-3Cyclin-T1-3 [Source:UniProtKB/Swiss-Prot;Acc:Q8LBC0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.