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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 3
  • mitochondrion 1
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra009045.1-P
Bra031892.1-P
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY60279 Canola cytosol 96.49 96.49
CDY03933 Canola cytosol 96.17 96.17
AT1G27630.1 Thale cress cytosol 88.82 87.7
Bra010927.1-P Field mustard nucleus 88.18 86.25
Bra006723.1-P Field mustard nucleus 30.99 36.74
Solyc07g032480.2.1 Tomato nucleus 43.77 33.17
VIT_18s0001g12980.t01 Wine grape nucleus 46.01 32.58
PGSC0003DMT400044127 Potato nucleus 43.77 32.31
Bra031514.1-P Field mustard cytosol 31.63 31.33
GSMUA_Achr8P18640_001 Banana nucleus 40.58 30.68
GSMUA_Achr3P20770_001 Banana nucleus 40.26 30.14
Bra013402.1-P Field mustard nucleus 35.14 27.16
Os02t0133000-00 Rice extracellular 37.38 26.23
Bra020954.1-P Field mustard nucleus 41.53 24.67
Bra021950.1-P Field mustard nucleus 43.45 24.33
Bra025087.1-P Field mustard nucleus 42.81 23.63
Bra037473.1-P Field mustard mitochondrion 15.65 23.45
Bra020686.1-P Field mustard cytosol 17.25 21.34
KXG29406 Sorghum cytosol 37.38 21.16
Zm00001d015164_P001 Maize cytosol 36.74 21.14
Bra020685.1-P Field mustard cytosol 12.46 20.0
Os02t0438200-01 Rice nucleus 37.7 18.73
Zm00001d017392_P009 Maize cytosol 38.34 18.29
Bra012508.1-P Field mustard nucleus 23.64 17.92
Zm00001d051291_P003 Maize cytosol 38.34 17.83
EES07541 Sorghum plastid 38.66 17.36
TraesCS6A01G096600.1 Wheat nucleus 37.7 16.74
TraesCS6B01G125000.1 Wheat nucleus 37.7 15.65
TraesCS6D01G087700.1 Wheat nucleus 36.74 13.76
HORVU6Hr1G017740.2 Barley nucleus 30.03 10.34
Bra032800.1-P Field mustard cytosol 19.81 9.97
Protein Annotations
EnsemblPlants:Bra030056.1EnsemblPlants:Bra030056.1-PEnsemblPlantsGene:Bra030056Gene3D:1.10.472.10InterPro:Cyclin-likeInterPro:Cyclin-like_sf
InterPro:Cyclin_NPANTHER:PTHR10026PANTHER:PTHR10026:SF77PFAM:PF00134PIRSF:PIRSF028758SMART:SM00385
SUPFAM:SSF47954UniParc:UPI0002541141UniProt:M4EMN6MapMan:13.1.1.1.9::
Description
AT1G27630 (E=6e-161) CYCT1;3 | CYCT1;3 (CYCLIN T 1;3); cyclin-dependent protein kinase
Coordinates
chrA07:-:6924966..6927228
Molecular Weight (calculated)
36470.8 Da
IEP (calculated)
8.035
GRAVY (calculated)
-0.294
Length
313 amino acids
Sequence
(BLAST)
001: MGEEHPRKRS RQHFEAEEAR HLSLRECETS KWYFSREEIE RFSPSRKDGI DLPKESFLRS SYCSFLQRLG MQLHVSQVTI GCAMVMCHRF YMRQSLAKND
101: WQTIATASLF LACKAEDEPC QLSNVVVASY EIIFEWDPSA SVRIHQTECY HEFKEIILAG ERLLLDTSAF HLLDVELPYK TLAAALNRLN AWPDLATAAW
201: NFVHDWLRTT LCLQYKPHVI ATATVHLAAT FQNAKVGSRR DWWLEFGVTT KLLKEVIQEM YMLIEVNRRR ALPPPRREVA WAIPTAINPP VHLARGYPFH
301: SYPMQSYRQP GIW
Best Arabidopsis Sequence Match ( AT1G27630.1 )
(BLAST)
001: MGEEHPRKRS RQHFEAEARN VSLFESPQCE TSKWYFSREE IERFSPSRKD GIDLVKESFL RSSYCTFLQR LGMKLHVSQV TISCAMVMCH RFYMRQSHAK
101: NDWQTIATSS LFLACKAEDE PCQLSSVVVA SYEIIYEWDP SASIRIHQTE CYHEFKEIIL SGESLLLSTS AFHLDIELPY KPLAAALNRL NAWPDLATAA
201: WNFVHDWIRT TLCLQYKPHV IATATVHLAA TFQNAKVGSR RDWWLEFGVT TKLLKEVIQE MCTLIEVDRR RNMPPPPPPP RRELSWAIPA AVKPVHMARA
301: YPFHSYPLQS YRQAGIW
Arabidopsis Description
CYCT1-3Cyclin-T1-3 [Source:UniProtKB/Swiss-Prot;Acc:Q8LBC0]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.