Factsheet for Bra031892.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000321.1-P
Bra000943.1-P
Bra001578.1-P
Bra004778.1-P
Bra010927.1-P
Bra013808.1-P
Bra019224.1-P
Bra021584.1-P
Bra023783.1-P
Bra027285.1-P
Bra030056.1-P
Bra037384.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64960.1	Bra010927.1-P	AT1G27630.1	12678503
AT5G64960.1	Bra030056.1-P	AT1G27630.1	12678503
AT5G64960.1	Bra000321.1-P	AT2G43710.1	20706207
AT5G64960.1	Bra004778.1-P	AT2G43710.1	20706207
AT5G64960.1	Bra001578.1-P	AT3G15000.1	12678503
AT5G64960.1	Bra021584.1-P	AT3G15000.1	12678503
AT5G64960.1	Bra027285.1-P	AT3G15000.1	12678503
AT5G64960.1	Bra023783.1-P	AT3G55760.1	20706207
AT5G64960.1	Bra000943.1-P	AT4G01090.1	21798944
AT5G64960.1	Bra037384.1-P	AT4G01090.1	21798944
AT5G64960.1	Bra013808.1-P	AT4G24500.1	21798944
AT5G64960.1	Bra019224.1-P	AT4G24500.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31293	Canola	nucleus	99.61	99.61
CDY33994	Canola	nucleus	98.84	99.03
AT5G64960.1	Thale cress	nucleus	93.63	94.54
Bra028333.1-P	Field mustard	nucleus	86.1	87.8
Bra009045.1-P	Field mustard	nucleus	83.78	85.27
VIT_07s0141g00280.t01	Wine grape	cytosol	40.15	83.87
Zm00001d012392_P001	Maize	cytosol	32.43	82.35
Solyc04g056280.2.1	Tomato	nucleus	75.29	76.17
Bra024341.1-P	Field mustard	cytosol	51.35	66.83
EES15089	Sorghum	cytosol	37.64	60.37
Os08t0453800-00	Rice	endoplasmic reticulum, plasma membrane	34.56	55.94
Bra009977.1-P	Field mustard	cytosol, nucleus, plastid	35.71	32.74
Bra022756.1-P	Field mustard	cytosol	35.71	32.34
Bra027966.1-P	Field mustard	nucleus	35.14	32.33
Bra040637.1-P	Field mustard	plastid	35.91	32.18
Bra035716.1-P	Field mustard	cytosol	35.14	31.38
Bra028011.1-P	Field mustard	nucleus	37.07	30.72
Bra039466.1-P	Field mustard	plastid	34.36	30.53
Bra010213.1-P	Field mustard	nucleus	36.68	30.35
Bra037899.1-P	Field mustard	nucleus	36.1	30.31
Bra036018.1-P	Field mustard	nucleus	36.1	30.11
Bra030962.1-P	Field mustard	plastid	38.03	29.89
Bra003921.1-P	Field mustard	plastid	35.71	29.74
Bra016132.1-P	Field mustard	plastid	36.49	29.72
Bra038097.1-P	Field mustard	plastid	38.22	29.03
Bra027540.1-P	Field mustard	nucleus	35.71	28.95
Bra007973.1-P	Field mustard	nucleus, plastid	35.91	28.79
Bra015920.1-P	Field mustard	cytosol	34.75	28.17
Bra027895.1-P	Field mustard	nucleus	35.14	27.41
Bra030788.1-P	Field mustard	nucleus	34.17	27.4
Bra028432.1-P	Field mustard	nucleus, plastid	33.98	27.04
Bra031674.1-P	Field mustard	nucleus	35.14	26.22
Bra035472.1-P	Field mustard	nucleus	35.52	26.21
Bra015260.1-P	Field mustard	mitochondrion, nucleus	34.75	24.9
Bra016547.1-P	Field mustard	nucleus	35.52	24.8
Bra020008.1-P	Field mustard	nucleus	34.94	24.01
Bra041128.1-P	Field mustard	plastid	24.52	23.78
Bra013662.1-P	Field mustard	nucleus	32.05	23.12
Bra001023.1-P	Field mustard	nucleus	32.24	15.7
Bra039147.1-P	Field mustard	nucleus	32.43	15.53
Os01t0201000-01	Rice	plasma membrane	2.12	8.59

Protein Annotations

Gene3D:1.10.510.10	MapMan:13.1.1.2.3	MapMan:15.3.2.1.1	MapMan:18.4.3.1.3	Gene3D:3.30.200.20	EnsemblPlantsGene:Bra031892
EnsemblPlants:Bra031892.1	EnsemblPlants:Bra031892.1-P	GO:GO:0000003	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006397
GO:GO:0006464	GO:GO:0006468	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009414	GO:GO:0009605	GO:GO:0009607	GO:GO:0009615	GO:GO:0009628	GO:GO:0009791
GO:GO:0009908	GO:GO:0009987	GO:GO:0016301	GO:GO:0016604	GO:GO:0016740	GO:GO:0019538
GO:GO:0048366	GO:GO:0048440	GO:GO:0050792	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	UniProt:M4ESW2
PFAM:PF00069	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24056	PANTHER:PTHR24056:SF240
InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI000057C515
SEG:seg	:	:	:	:	:

Description

AT5G64960 (E=6e-218) CDKC2, CDKC;2 | CDKC2 (Cyclin dependent kinase group C 2); kinase

Coordinates

chrA02:+:27244529..27247128

Molecular Weight (calculated)

57508.1 Da

IEP (calculated)

9.496

GRAVY (calculated)

-0.850

Length

518 amino acids

Sequence
(BLAST)

001: MAAAACGQLN LEEPTPIRGS RSVDCFEKLE QIGEGTYGQV YMAKDIKTGE IVALKKIRMD NEREGFPITA IREIKILKKL HHENVIHLKE IVTSPGRDRD
101: DQGKPDNNKY KGGIYMVFEY MDHDLTGLAD RPGLRFTVPQ IKCYMKQLLT GLHYCHVNQV LHRDIKGSNL LIDNEGNLKL ADFGLARSYS HDHSGNLTNR
201: VITLWYRPPE LLLGATKYGP AIDMWSVGCI FAELLNGKPI LPGKTESEQL NKIYELCGSP DENNWPGVTK MPWYNQMKSS RPLKRRVREV YRHFDRHALE
301: LLEKMLVLDP SQRISAKDAL DAEYFWTDPL PCDPKSLPTY ESSHEFQTKK KRQQMRHNEE AAKKQKLQHP QQQQHSRLPP QQHGVGQSHA APHWPVGPNH
401: PINNGPPPQL PAGGPSGHNY YQKARVGGAP GPNRYPPGGN QTGGYNNNQS RGGYSSGSYP PQGRGAAPYG GAGPRGPSGG YGAGPPNYSQ GGGGQYGGSG
501: RGQNPMGGAR NQQYGWQP

Best Arabidopsis Sequence Match ( AT5G64960.1 )
(BLAST)

001: MAAAAFGQLN LEEPPPIWGS RSVDCFEKLE QIGEGTYGQV YMAKEIKTGE IVALKKIRMD NEREGFPITA IREIKILKKL HHENVIHLKE IVTSPGRDRD
101: DQGKPDNNKY KGGIYMVFEY MDHDLTGLAD RPGLRFTVPQ IKCYMKQLLT GLHYCHVNQV LHRDIKGSNL LIDNEGNLKL ADFGLARSYS HDHTGNLTNR
201: VITLWYRPPE LLLGATKYGP AIDMWSVGCI FAELLNGKPI LPGKTENEQL NKIYELCGSP DESNWPGVSK MPWYNQMKSS RPLKRRVREI YRHFDRHALE
301: LLEKMLVLDP SQRICAKDAL DAEYFWTDPL PCDPKSLPTY ESSHEFQTKK KRQQMRHNEE AAKKQKLQHP QQQHSRLPPQ QHGVGQSHAA PLWPAGPNHP
401: MNNNAPPPQI PAGGHYYGGK PRGGAPVPNR YPPSGNQTGG YNNQSRGGYS SGAYPPQGRG APYGAGPRGP SGGYGVGPPN YSQGGGQYGG SGGSGRGQNP
501: MGGARNQQYG WQP

Arabidopsis Description

CDKC-2Cyclin-dependent kinase C-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4P1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.