Factsheet for Bra028333.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72385	Canola	cytosol	32.87	99.4
CDY18101	Canola	cytosol	85.83	94.58
Bra031892.1-P	Field mustard	nucleus	87.8	86.1
VIT_07s0141g00280.t01	Wine grape	cytosol	38.98	79.84
Bra009045.1-P	Field mustard	nucleus	79.92	79.76
Zm00001d012392_P001	Maize	cytosol	30.51	75.98
Solyc04g056280.2.1	Tomato	nucleus	71.26	70.7
Bra024341.1-P	Field mustard	cytosol	50.0	63.82
EES15089	Sorghum	cytosol	37.4	58.82
Os08t0453800-00	Rice	endoplasmic reticulum, plasma membrane	34.06	54.06
Bra009977.1-P	Field mustard	cytosol, nucleus, plastid	36.61	32.92
Bra040637.1-P	Field mustard	plastid	36.22	31.83
Bra027966.1-P	Field mustard	nucleus	35.24	31.79
Bra022756.1-P	Field mustard	cytosol	35.43	31.47
Bra039466.1-P	Field mustard	plastid	35.24	30.7
Bra035716.1-P	Field mustard	cytosol	34.84	30.52
Bra028011.1-P	Field mustard	nucleus	37.4	30.4
Bra010213.1-P	Field mustard	nucleus	37.01	30.03
Bra037899.1-P	Field mustard	nucleus	36.42	29.98
Bra030962.1-P	Field mustard	plastid	38.78	29.89
Bra036018.1-P	Field mustard	nucleus	36.42	29.79
Bra003921.1-P	Field mustard	plastid	35.43	28.94
Bra027540.1-P	Field mustard	nucleus	36.22	28.8
Bra038097.1-P	Field mustard	plastid	38.58	28.74
Bra016132.1-P	Field mustard	plastid	35.83	28.62
Bra015920.1-P	Field mustard	cytosol	35.63	28.33
Bra007973.1-P	Field mustard	nucleus, plastid	35.43	27.86
Bra028432.1-P	Field mustard	nucleus, plastid	34.65	27.04
Bra027895.1-P	Field mustard	nucleus	35.24	26.96
Bra030788.1-P	Field mustard	nucleus	34.06	26.78
Bra031674.1-P	Field mustard	nucleus	35.43	25.94
Bra035472.1-P	Field mustard	nucleus	35.63	25.78
Bra015260.1-P	Field mustard	mitochondrion, nucleus	36.42	25.59
Bra016547.1-P	Field mustard	nucleus	37.01	25.34
Bra041128.1-P	Field mustard	plastid	25.2	23.97
Bra020008.1-P	Field mustard	nucleus	35.04	23.61
Bra013662.1-P	Field mustard	nucleus	32.87	23.26
Bra001023.1-P	Field mustard	nucleus	33.46	15.98
Bra039147.1-P	Field mustard	nucleus	33.07	15.53
Os01t0201000-01	Rice	plasma membrane	2.36	9.38

Protein Annotations

Gene3D:1.10.510.10	MapMan:13.1.1.2.3	MapMan:15.3.2.1.1	MapMan:18.4.3.1.3	Gene3D:3.30.200.20	EnsemblPlantsGene:Bra028333
EnsemblPlants:Bra028333.1	EnsemblPlants:Bra028333.1-P	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672
GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719	InterPro:Kinase-like_dom_sf
UniProt:M4EHR8	PFAM:PF00069	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24056
PANTHER:PTHR24056:SF240	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS
UniParc:UPI00025437D7	SEG:seg	:	:	:	:

Description

AT5G64960 (E=1e-217) CDKC2, CDKC;2 | CDKC2 (Cyclin dependent kinase group C 2); kinase

Coordinates

chrA01:-:18440688..18443283

Molecular Weight (calculated)

57008.4 Da

IEP (calculated)

9.281

GRAVY (calculated)

-0.865

Length

508 amino acids

Sequence
(BLAST)

001: MAIADFGQLN MEEPPPFWGS RGVDCFEKLE QVGEGTYGQV YMAREIKTGE IVALKKIRMD NEREGFPITA IREIKILNKL DHPNVIHLKE IVTSPGRDRD
101: DQGKPDNNKY KGGIYMVFEY MDHDLTGLSD RSTQGFTVPQ IKCYMKQLLT GLHYCHIKKV LHRDIKGSNL LIDNEGNLKL ADFGLARSYS HDHDGNLTNR
201: VITLWYRPPE LLLGATKYGP AIDMWSVGCI FAELLNGKPI LPGKTETEQL TKIYELCGSP DENNWPGVSK MPWFDQLKSP RPLRRRLREI YRNFDRHALE
301: LLERMLVLDP SQRISAKDAL DADYFWTDPL PCDPKSLPKY ESSHEFQTKK RRQEMRHNEE AAKKQKMQHP QQHSRWPAQQ HGVGQTHAAP HWPAGPNHPI
401: NNGPPPQIPA GGPSGHHYYQ NPRGPAPGSN GYHTSGNQTG GYNNRSRGGY SSGSFPSQGR GAPYGAGPSG GYGVRPPNYS QSGGQYGGSG RGQNPMGGAR
501: NQRYGGWQ

Best Arabidopsis Sequence Match ( AT5G64960.1 )
(BLAST)

001: MAAAAFGQLN LEEPPPIWGS RSVDCFEKLE QIGEGTYGQV YMAKEIKTGE IVALKKIRMD NEREGFPITA IREIKILKKL HHENVIHLKE IVTSPGRDRD
101: DQGKPDNNKY KGGIYMVFEY MDHDLTGLAD RPGLRFTVPQ IKCYMKQLLT GLHYCHVNQV LHRDIKGSNL LIDNEGNLKL ADFGLARSYS HDHTGNLTNR
201: VITLWYRPPE LLLGATKYGP AIDMWSVGCI FAELLNGKPI LPGKTENEQL NKIYELCGSP DESNWPGVSK MPWYNQMKSS RPLKRRVREI YRHFDRHALE
301: LLEKMLVLDP SQRICAKDAL DAEYFWTDPL PCDPKSLPTY ESSHEFQTKK KRQQMRHNEE AAKKQKLQHP QQQHSRLPPQ QHGVGQSHAA PLWPAGPNHP
401: MNNNAPPPQI PAGGHYYGGK PRGGAPVPNR YPPSGNQTGG YNNQSRGGYS SGAYPPQGRG APYGAGPRGP SGGYGVGPPN YSQGGGQYGG SGGSGRGQNP
501: MGGARNQQYG WQP

Arabidopsis Description

CDKC-2Cyclin-dependent kinase C-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4P1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.