Factsheet for Bra001578.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 6
plastid 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra009045.1-P
Bra025315.1-P
Bra031892.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G15000.1	Bra025315.1-P	AT3G27960.1	21798944
AT3G15000.1	Bra009045.1-P	AT5G10270.1	12678503
AT3G15000.1	Bra031892.1-P	AT5G64960.1	12678503

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82454	Canola	mitochondrion, plastid	96.23	91.77
CDX75801	Canola	mitochondrion, plastid	96.5	89.72
Bra027285.1-P	Field mustard	plastid	85.98	79.35
Bra021584.1-P	Field mustard	plastid	70.35	78.38
AT3G15000.1	Thale cress	plastid	81.13	76.2
VIT_19s0014g01550.t01	Wine grape	plastid	65.23	57.48
KRH27318	Soybean	nucleus	53.1	54.27
Solyc10g007180.2.1	Tomato	plastid	55.26	52.43
KRH21995	Soybean	plastid	55.8	51.62
PGSC0003DMT400039805	Potato	plastid	55.53	51.12
PGSC0003DMT400054809	Potato	mitochondrion	56.33	50.85
EER92766	Sorghum	mitochondrion	52.56	50.26
Os09t0509000-01	Rice	plastid	53.1	49.75
Os09t0132600-01	Rice	mitochondrion	52.02	48.49
Solyc12g014230.1.1	Tomato	nucleus	56.06	48.48
TraesCS5A01G291000.1	Wheat	mitochondrion	51.48	47.99
TraesCS5D01G298300.2	Wheat	mitochondrion	51.75	47.76
TraesCS5B01G289900.1	Wheat	nucleus	51.75	47.64
EER92767	Sorghum	mitochondrion	44.2	47.26
TraesCS5B01G290000.1	Wheat	mitochondrion, plastid	42.86	47.18
HORVU5Hr1G077020.3	Barley	mitochondrion	51.48	46.93
Bra001218.1-P	Field mustard	cytosol	17.52	46.1
Zm00001d048291_P001	Maize	mitochondrion	50.4	45.61
Bra040292.1-P	Field mustard	mitochondrion, plastid	29.11	43.72
TraesCS7B01G160200.1	Wheat	mitochondrion	48.79	43.51
TraesCS7A01G262500.1	Wheat	mitochondrion	48.25	43.03
TraesCS7D01G263300.1	Wheat	mitochondrion	48.79	42.0
GSMUA_Achr6P08230_001	Banana	mitochondrion	45.55	41.73
HORVU7Hr1G054850.2	Barley	plastid	48.52	41.57
GSMUA_AchrUn_...	Banana	mitochondrion	44.47	40.84
GSMUA_Achr10P...	Banana	mitochondrion	47.44	40.18
Bra017328.1-P	Field mustard	cytosol	18.87	37.63
Bra016051.1-P	Field mustard	mitochondrion	17.52	35.52
Bra005357.1-P	Field mustard	plastid	21.83	34.62
Bra005495.1-P	Field mustard	plastid	21.29	34.35
Bra021852.1-P	Field mustard	plastid	20.49	34.23
Bra003876.1-P	Field mustard	mitochondrion	17.52	34.21
Bra036402.1-P	Field mustard	mitochondrion, plastid	19.41	32.29
Bra017613.1-P	Field mustard	plastid	5.39	29.41
Bra016835.1-P	Field mustard	plastid	18.33	29.31
Bra023005.1-P	Field mustard	endoplasmic reticulum	6.74	26.88
OQU89756	Sorghum	plastid	29.65	25.7
Bra019853.1-P	Field mustard	plastid	18.06	24.91
Bra013439.1-P	Field mustard	mitochondrion	25.61	24.68
Bra012522.1-P	Field mustard	mitochondrion, plastid	23.99	22.94
Bra025105.1-P	Field mustard	mitochondrion	22.91	11.6

Protein Annotations

EnsemblPlants:Bra001578.1	EnsemblPlants:Bra001578.1-P	EnsemblPlantsGene:Bra001578	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016554	PANTHER:PTHR31346	PANTHER:PTHR31346:SF4	SEG:seg	UniParc:UPI00025409E6
UniProt:M4CBJ8	MapMan:16.12.5.1	:	:	:	:

Description

AT3G15000 (E=2e-073) | LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: plastid developmental protein DAG, putative (TAIR:AT3G06790.2); Has 50779 Blast hits to 24732 proteins in 941 species: Archae - 10; Bacteria - 4862; Metazoa - 25623; Fungi - 7071; Plants - 6957; Viruses - 900; Other Eukaryotes - 5356 (source: NCBI BLink).

Coordinates

chrA03:+:17161235..17162796

Molecular Weight (calculated)

39743.5 Da

IEP (calculated)

10.151

GRAVY (calculated)

-0.913

Length

371 amino acids

Sequence
(BLAST)

001: MATHTISRSF LRRPAKSLSS LLTRSFASSP APLAKTSASS LSTLRSRPLV AALSSVARGG FVSLKGLSTQ ATSSSLNDPN PNWSNRPPKE TILLDGCDFE
101: HWLVVVEPPE GDLTRDEIID GYIKTLAQIV GSEEEARMKI YSVSTRCYFA FGALVSEDLS HKLKELPKVR WVLPDSYLDV RNKDYGGRNR RNDRPRNFDR
201: SRNFERRREN MSGGPPPQRT PMGGPPPPPH MGGAAPPPPQ MGQNYGGPPP PQNNMGGQRP PPNYGGAPPQ NNMGGQRPPA SYGGAPPPSY GGGPPPKYGG
301: APPQNNMGGA PPPPNYGGAV PPQNSMGGGP PNAGWSGNNN NYQQQSGGMQ QPQYQNNYPP NRDGSGNPYQ G

Best Arabidopsis Sequence Match ( AT3G15000.1 )
(BLAST)

001: MATHTISRSI LCRPAKSLSF LFTRSFASSA PLAKSPASSL LSRSRPLVAA FSSVFRGGLV SVKGLSTQAT SSSLNDPNPN WSNRPPKETI LLDGCDFEHW
101: LVVVEPPQGE PTRDEIIDSY IKTLAQIVGS EDEARMKIYS VSTRCYYAFG ALVSEDLSHK LKELSNVRWV LPDSYLDVRN KDYGGEPFID GKAVPYDPKY
201: HEEWIRNNAR ANERNRRNDR PRNNDRSRNF ERRRENMAGG PPPQRPPMGG PPPPPHIGGS APPPPHMGGS APPPPHMGQN YGPPPPNNMG GPRHPPPYGA
301: PPQNNMGGPR PPQNYGGTPP PNYGGAPPAN NMGGAPPPNY GGGPPPQYGA VPPPQYGGAP PQNNNYQQQG SGMQQPQYQN NYPPNRDGSG NPYQG

Arabidopsis Description

MORF8Multiple organellar RNA editing factor 8, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LKA5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.