Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 7
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS6A01G274500.1 | |
| TraesCS6B01G302000.1 | |
| TraesCS6D01G254800.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G15000.1 | TraesCS6A01G274500.1 | AT3G27960.1 | 21798944 |
| AT3G15000.1 | TraesCS6B01G302000.1 | AT3G27960.1 | 21798944 |
| AT3G15000.1 | TraesCS6D01G254800.1 | AT3G27960.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G291000.1 | Wheat | mitochondrion | 98.01 | 99.25 |
| TraesCS5D01G298300.2 | Wheat | mitochondrion | 98.51 | 98.76 |
| HORVU5Hr1G077020.3 | Barley | mitochondrion | 95.29 | 94.35 |
| TraesCS5B01G290000.1 | Wheat | mitochondrion, plastid | 67.0 | 80.12 |
| TraesCS7B01G160200.1 | Wheat | mitochondrion | 66.75 | 64.66 |
| CDY20096 | Canola | plastid | 45.16 | 57.96 |
| Bra021584.1-P | Field mustard | plastid | 46.9 | 56.76 |
| CDX97626 | Canola | plastid | 49.88 | 55.22 |
| CDX82454 | Canola | mitochondrion, plastid | 53.1 | 55.01 |
| CDX98522 | Canola | plastid | 50.37 | 54.72 |
| CDX75801 | Canola | mitochondrion, plastid | 53.6 | 54.14 |
| GSMUA_Achr6P08230_001 | Banana | mitochondrion | 54.34 | 54.07 |
| Solyc10g007180.2.1 | Tomato | plastid | 51.86 | 53.45 |
| AT3G15000.1 | Thale cress | plastid | 52.36 | 53.42 |
| Bra027285.1-P | Field mustard | plastid | 53.1 | 53.23 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 53.35 | 53.22 |
| GSMUA_Achr10P... | Banana | mitochondrion | 57.57 | 52.97 |
| PGSC0003DMT400039805 | Potato | plastid | 51.86 | 51.86 |
| Bra001578.1-P | Field mustard | plastid | 47.64 | 51.75 |
| KRH27318 | Soybean | nucleus | 46.4 | 51.52 |
| PGSC0003DMT400054809 | Potato | mitochondrion | 52.11 | 51.09 |
| VIT_19s0014g01550.t01 | Wine grape | plastid | 52.85 | 50.59 |
| KRH21995 | Soybean | plastid | 49.38 | 49.63 |
| Solyc12g014230.1.1 | Tomato | nucleus | 52.36 | 49.18 |
| TraesCS6B01G344700.2 | Wheat | mitochondrion | 27.79 | 44.27 |
| CDY32326 | Canola | cytosol | 38.21 | 43.63 |
| AT1G53260.1 | Thale cress | cytosol | 28.29 | 42.07 |
| TraesCS2B01G457700.1 | Wheat | plastid | 20.35 | 38.32 |
| TraesCS7B01G207300.1 | Wheat | plastid | 19.6 | 34.65 |
| TraesCS6B01G010000.1 | Wheat | plastid | 20.1 | 32.27 |
| TraesCS4B01G107700.2 | Wheat | mitochondrion | 23.82 | 22.17 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G289900.1 | EnsemblPlantsGene:TraesCS5B01G289900 | PANTHER:PTHR31346 | PANTHER:PTHR31346:SF4 | SEG:seg | MapMan:16.12.5.1 |
Description
No Description!
Coordinates
chr5B:-:476012444..476015908
Molecular Weight (calculated)
42983.4 Da
IEP (calculated)
8.927
GRAVY (calculated)
-0.927
Length
403 amino acids
Sequence
(BLAST)
(BLAST)
001: MASASRALLL SRASPLHAAA SRFLRPVAAA GSLLPAALVP SPAAAPWAAA RRFATQPANS SLRDSSPNWS NRPPKETILL DGCDFEHWLV VMEPPPGDGA
101: NPDVTRDEII DGYIKTLAQV VGSEDEARMK IYSVSTRHYF AFGALVSEEL SYKLKELPKV RWVLPDSYLD VRNKDYGGEP FIDGQAVPYD PKYHEEWVRN
201: NARANERSRR NDRPRNFDRS RNFERRRENT QAYQSGPPNQ MPPHDAAPPS RGAQGPPPPS GAPPNYQPHA PNPQAGYAAG GGPNYPNAPP PPGYRGAPAP
301: GYQAGNQGYQ GNPGGNMHNG PGPAYHSNNP GYQGGAPGGN PLPPFAGGNQ PPPYQGGGPS YGGGAPDYQG QPGGNPGYQG GGNYNNAAPP PYEGRDGPGR
401: NYQ
101: NPDVTRDEII DGYIKTLAQV VGSEDEARMK IYSVSTRHYF AFGALVSEEL SYKLKELPKV RWVLPDSYLD VRNKDYGGEP FIDGQAVPYD PKYHEEWVRN
201: NARANERSRR NDRPRNFDRS RNFERRRENT QAYQSGPPNQ MPPHDAAPPS RGAQGPPPPS GAPPNYQPHA PNPQAGYAAG GGPNYPNAPP PPGYRGAPAP
301: GYQAGNQGYQ GNPGGNMHNG PGPAYHSNNP GYQGGAPGGN PLPPFAGGNQ PPPYQGGGPS YGGGAPDYQG QPGGNPGYQG GGNYNNAAPP PYEGRDGPGR
401: NYQ
001: MATHTISRSI LCRPAKSLSF LFTRSFASSA PLAKSPASSL LSRSRPLVAA FSSVFRGGLV SVKGLSTQAT SSSLNDPNPN WSNRPPKETI LLDGCDFEHW
101: LVVVEPPQGE PTRDEIIDSY IKTLAQIVGS EDEARMKIYS VSTRCYYAFG ALVSEDLSHK LKELSNVRWV LPDSYLDVRN KDYGGEPFID GKAVPYDPKY
201: HEEWIRNNAR ANERNRRNDR PRNNDRSRNF ERRRENMAGG PPPQRPPMGG PPPPPHIGGS APPPPHMGGS APPPPHMGQN YGPPPPNNMG GPRHPPPYGA
301: PPQNNMGGPR PPQNYGGTPP PNYGGAPPAN NMGGAPPPNY GGGPPPQYGA VPPPQYGGAP PQNNNYQQQG SGMQQPQYQN NYPPNRDGSG NPYQG
101: LVVVEPPQGE PTRDEIIDSY IKTLAQIVGS EDEARMKIYS VSTRCYYAFG ALVSEDLSHK LKELSNVRWV LPDSYLDVRN KDYGGEPFID GKAVPYDPKY
201: HEEWIRNNAR ANERNRRNDR PRNNDRSRNF ERRRENMAGG PPPQRPPMGG PPPPPHIGGS APPPPHMGGS APPPPHMGQN YGPPPPNNMG GPRHPPPYGA
301: PPQNNMGGPR PPQNYGGTPP PNYGGAPPAN NMGGAPPPNY GGGPPPQYGA VPPPQYGGAP PQNNNYQQQG SGMQQPQYQN NYPPNRDGSG NPYQG
Arabidopsis Description
MORF8Multiple organellar RNA editing factor 8, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LKA5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.