CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 2
plastid 7

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69849
CDX86457
CDX96988
CDY31293
CDY33994
CDY58518

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G15000.1	CDX86457	AT3G27960.1	21798944
AT3G15000.1	CDY58518	AT3G27960.1	21798944
AT3G15000.1	CDX69849	AT5G10270.1	12678503
AT3G15000.1	CDX96988	AT5G10270.1	12678503
AT3G15000.1	CDY31293	AT5G64960.1	12678503
AT3G15000.1	CDY33994	AT5G64960.1	12678503

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98522	Canola	plastid	96.7	94.88
Bra027285.1-P	Field mustard	plastid	97.25	88.06
CDX82454	Canola	mitochondrion, plastid	83.24	77.89
AT3G15000.1	Thale cress	plastid	84.34	77.72
CDX75801	Canola	mitochondrion, plastid	85.16	77.69
CDY20096	Canola	plastid	59.62	69.11
VIT_19s0014g01550.t01	Wine grape	plastid	70.6	61.05
CDY32326	Canola	cytosol	57.97	59.77
KRH27318	Soybean	nucleus	58.52	58.68
Solyc10g007180.2.1	Tomato	plastid	59.62	55.5
KRH21995	Soybean	plastid	60.71	55.11
EER92766	Sorghum	mitochondrion	58.24	54.64
PGSC0003DMT400039805	Potato	plastid	60.44	54.59
PGSC0003DMT400054809	Potato	mitochondrion	59.89	53.04
EER92767	Sorghum	mitochondrion	50.27	52.74
Os09t0509000-01	Rice	plastid	56.59	52.02
Solyc12g014230.1.1	Tomato	nucleus	60.99	51.75
Os09t0132600-01	Rice	mitochondrion	56.32	51.51
TraesCS5D01G298300.2	Wheat	mitochondrion	55.22	50.0
TraesCS5B01G289900.1	Wheat	nucleus	55.22	49.88
Zm00001d048291_P001	Maize	mitochondrion	56.04	49.76
TraesCS5A01G291000.1	Wheat	mitochondrion	54.12	49.5
HORVU5Hr1G077020.3	Barley	mitochondrion	54.95	49.14
TraesCS5B01G290000.1	Wheat	mitochondrion, plastid	45.05	48.66
CDY08033	Canola	mitochondrion	28.57	48.37
CDX74079	Canola	cytosol	19.23	47.62
TraesCS7B01G160200.1	Wheat	mitochondrion	54.4	47.6
TraesCS7A01G262500.1	Wheat	mitochondrion	53.85	47.12
CDY34929	Canola	cytosol	17.86	46.43
TraesCS7D01G263300.1	Wheat	mitochondrion	54.4	45.94
HORVU7Hr1G054850.2	Barley	plastid	54.12	45.5
CDX79529	Canola	cytosol	15.11	45.45
GSMUA_Achr6P08230_001	Banana	mitochondrion	49.73	44.69
GSMUA_AchrUn_...	Banana	mitochondrion	49.45	44.55
CDX96416	Canola	mitochondrion	23.08	44.21
GSMUA_Achr10P...	Banana	mitochondrion	53.02	44.06
CDY58181	Canola	cytosol	20.05	43.45
CDX72924	Canola	mitochondrion	21.43	42.62
CDX68262	Canola	mitochondrion	20.88	40.0
CDY65020	Canola	mitochondrion	20.88	40.0
CDY20996	Canola	cytosol	16.21	38.56
CDX97960	Canola	cytosol	16.21	38.31
CDX84224	Canola	mitochondrion, plastid	23.9	37.83
CDY31675	Canola	plastid	23.9	37.18
CDY17174	Canola	plastid	23.35	36.96
CDY37719	Canola	plastid	22.53	36.94
CDY19491	Canola	plastid	23.35	36.8
CDY23734	Canola	plastid	22.53	35.96
CDY65831	Canola	mitochondrion, plastid	21.98	35.87
CDX79597	Canola	plastid	20.33	31.76
CDY37239	Canola	cytosol	10.99	30.53
OQU89756	Sorghum	plastid	34.89	29.67
CDY49781	Canola	plastid	19.51	29.58
CDY57037	Canola	mitochondrion	18.96	26.64
CDX84615	Canola	mitochondrion	12.91	26.26
CDX78969	Canola	mitochondrion	25.82	24.54
CDY50054	Canola	mitochondrion	25.0	23.95
CDX98651	Canola	mitochondrion	20.6	23.22
CDY01629	Canola	mitochondrion	24.73	22.9
CDY60655	Canola	plastid	23.35	11.77

Protein Annotations

EnsemblPlants:CDX97626	EnsemblPlantsGene:GSBRNA2T00104850001	PANTHER:PTHR31346	PANTHER:PTHR31346:SF4	ProteinID:CDX97626	ProteinID:CDX97626.1
SEG:seg	UniParc:UPI0004EDEB91	MapMan:16.12.5.1	:	:	:

Description

BnaA05g24530D

Coordinates

chrLK031900:+:687254..689352

Molecular Weight (calculated)

39330.1 Da

IEP (calculated)

9.596

GRAVY (calculated)

-0.824

Length

364 amino acids

Sequence
(BLAST)

001: MATHSISRSI LCRPAKSLSF LFTRSFASSA PLAKSPVSSL YTSSLLTRSR PLVAALSSAF RGGLGLSSQA TSSSLNDPSP NWSNRPPKET ILLDGCDFEH
101: WLVVVDPPEG DPTRDEIIDS YIKTLAQIVG SEEEARMKIY SVSTRCYFAF GALVSEDLSH KLKELPKVRW VLPDSYLDVR NKDYGGEPFI DGKAVPYDPK
201: YHEEWIRNNA RANERNRRND RPKNFDRSRN FERRRENMAG GPPPQRPPMG GPPPPHMGGS APPPPPMGQN YGQRPPPNYG GPPPPHNNMG GQRPPANYGG
301: APPPPPPNYG GPPPPNYGGT PPQNNMGGAP PPNYGGAPPP NYGGAPPPQN NMGGGGWWNA AATG

Best Arabidopsis Sequence Match ( AT3G15000.1 )
(BLAST)

001: MATHTISRSI LCRPAKSLSF LFTRSFASSA PLAKSPASSL LSRSRPLVAA FSSVFRGGLV SVKGLSTQAT SSSLNDPNPN WSNRPPKETI LLDGCDFEHW
101: LVVVEPPQGE PTRDEIIDSY IKTLAQIVGS EDEARMKIYS VSTRCYYAFG ALVSEDLSHK LKELSNVRWV LPDSYLDVRN KDYGGEPFID GKAVPYDPKY
201: HEEWIRNNAR ANERNRRNDR PRNNDRSRNF ERRRENMAGG PPPQRPPMGG PPPPPHIGGS APPPPHMGGS APPPPHMGQN YGPPPPNNMG GPRHPPPYGA
301: PPQNNMGGPR PPQNYGGTPP PNYGGAPPAN NMGGAPPPNY GGGPPPQYGA VPPPQYGGAP PQNNNYQQQG SGMQQPQYQN NYPPNRDGSG NPYQG

Arabidopsis Description

MORF8Multiple organellar RNA editing factor 8, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LKA5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.