Factsheet for Zm00001d048291_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

extracellular: 20408568
plasma membrane: 23508561
mitochondrion: 27297264
plasma membrane: 27341663
mitochondrion: 29575040

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 29575040 doi

WQ Wang, Y Wang, Q Zhang, IM Møller, SQ Song

Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d012392_P001
Zm00001d017793_P001
Zm00001d051589_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G15000.1	Zm00001d017793_P001	AT3G27960.1	21798944
AT3G15000.1	Zm00001d051589_P001	AT3G27960.1	21798944
AT3G15000.1	Zm00001d012392_P001	AT5G10270.1	12678503
AT3G15000.1	Zm00001d012392_P001	AT5G64960.1	12678503

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92766	Sorghum	mitochondrion	86.1	90.98
Os09t0509000-01	Rice	plastid	70.0	72.47
Os09t0132600-01	Rice	mitochondrion	67.32	69.35
TraesCS7A01G262500.1	Wheat	mitochondrion	67.8	66.83
TraesCS7B01G160200.1	Wheat	mitochondrion	67.8	66.83
TraesCS7D01G263300.1	Wheat	mitochondrion	68.29	64.97
HORVU7Hr1G054850.2	Barley	plastid	68.05	64.43
GSMUA_Achr6P08230_001	Banana	mitochondrion	56.34	57.04
CDX97626	Canola	plastid	49.76	56.04
CDX98522	Canola	plastid	50.24	55.53
CDY20096	Canola	plastid	41.46	54.14
GSMUA_AchrUn_...	Banana	mitochondrion	53.17	53.96
GSMUA_Achr10P...	Banana	mitochondrion	57.32	53.65
Bra021584.1-P	Field mustard	plastid	43.41	53.45
CDX82454	Canola	mitochondrion, plastid	50.24	52.96
CDX75801	Canola	mitochondrion, plastid	50.73	52.13
Bra027285.1-P	Field mustard	plastid	50.98	51.99
KRH27318	Soybean	nucleus	45.61	51.52
Solyc10g007180.2.1	Tomato	plastid	48.54	50.9
Bra001578.1-P	Field mustard	plastid	45.61	50.4
AT3G15000.1	Thale cress	plastid	48.54	50.38
PGSC0003DMT400039805	Potato	plastid	48.78	49.63
KRH21995	Soybean	plastid	48.54	49.63
VIT_19s0014g01550.t01	Wine grape	plastid	50.0	48.69
PGSC0003DMT400054809	Potato	mitochondrion	48.29	48.18
Solyc12g014230.1.1	Tomato	nucleus	49.27	47.09
Zm00001d026307_P001	Maize	mitochondrion	27.8	46.34
CDY32326	Canola	cytosol	35.61	41.36
AT1G53260.1	Thale cress	cytosol	26.34	39.85
Zm00001d026243_P002	Maize	extracellular	20.24	38.25
Zm00001d045528_P001	Maize	mitochondrion	19.51	35.87
Zm00001d024674_P001	Maize	plastid	18.78	34.53
Zm00001d049043_P001	Maize	mitochondrion	22.68	22.68

Protein Annotations

EnsemblPlants:Zm00001d048291_P001	EnsemblPlants:Zm00001d048291_T001	EnsemblPlantsGene:Zm00001d048291	EntrezGene:100282986	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016554	PANTHER:PTHR31346	PANTHER:PTHR31346:SF4	ProteinID:AQL09313.1
SEG:seg	UniParc:UPI000220BB5B	UniProt:K7WGQ3	MapMan:16.12.5.1	:	:

Description

Multiple organellar RNA editing factor 8 chloroplastic/mitochondrial

Coordinates

chr9:+:153995278..153999021

Molecular Weight (calculated)

43958.8 Da

IEP (calculated)

9.401

GRAVY (calculated)

-0.998

Length

410 amino acids

Sequence
(BLAST)

001: MASASRALLL SRALQAGASR RVPALLRPVA AAASLLPAVA GPAGAALGAR VRCFATQPAT SSLRDSSPNW SNRPPKETIL LDGCDFEHWL VIMEPPPGDA
101: SNPDITRDEI IDSYIKTLAQ VVGSEEEARQ KIYSVSTRHY FGFGALVSEE LSYKLKEIPK VRWVLPDSYL DVKNKDYGGE PFINGQAVPY DPKYHEEWVR
201: NNARANDRNR RNDRPRNFDR SRNFDRRREN MQNYQNRDGP PAQGFNGPPP PPGQNQMPSH HSQGNMSPQP PHAGGGQPNY QPQMQNPQTG YNPGGAPHYQ
301: QGAAPGYQGG PPGYQGGYQG NPGPAYQGGN TGYQGGNPPP PYQGSNPPPP YQGGSPPGPP PPYRGGSPPG PPPPYRGGNP NVPPYSGGGN PGYPGGSPGY
401: QGQGGNSNFQ

Best Arabidopsis Sequence Match ( AT3G15000.1 )
(BLAST)

001: MATHTISRSI LCRPAKSLSF LFTRSFASSA PLAKSPASSL LSRSRPLVAA FSSVFRGGLV SVKGLSTQAT SSSLNDPNPN WSNRPPKETI LLDGCDFEHW
101: LVVVEPPQGE PTRDEIIDSY IKTLAQIVGS EDEARMKIYS VSTRCYYAFG ALVSEDLSHK LKELSNVRWV LPDSYLDVRN KDYGGEPFID GKAVPYDPKY
201: HEEWIRNNAR ANERNRRNDR PRNNDRSRNF ERRRENMAGG PPPQRPPMGG PPPPPHIGGS APPPPHMGGS APPPPHMGQN YGPPPPNNMG GPRHPPPYGA
301: PPQNNMGGPR PPQNYGGTPP PNYGGAPPAN NMGGAPPPNY GGGPPPQYGA VPPPQYGGAP PQNNNYQQQG SGMQQPQYQN NYPPNRDGSG NPYQG

Arabidopsis Description

MORF8Multiple organellar RNA editing factor 8, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LKA5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.