Factsheet for Zm00001d049043_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

plastid: 22065420
plastid: 23198870
nucleus: 24677780
mitochondrion: 27297264
plasma membrane: 27341663
mitochondrion: 29575040

msms PMID: 24677780 doi

B Guo, Y Chen, C Li, T Wang, R Wang, B Wang, S Hu, X Du, H Xing, X Song, Y Yao, Q Sun, Z Ni

State Key Laboratory for Agrobiotechnology, Key Laboratory of Crop Heterosis and Utilization (MOE), Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing, China; National Plant Gene Research Centre (Beijing), Beijing, China.

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 29575040 doi

WQ Wang, Y Wang, Q Zhang, IM Møller, SQ Song

Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES08356	Sorghum	mitochondrion	88.29	80.8
Os11t0216400-01	Rice	mitochondrion	70.0	76.74
TraesCS4A01G203900.1	Wheat	nucleus	74.15	73.43
TraesCS4D01G104800.2	Wheat	mitochondrion	73.9	72.84
HORVU4Hr1G016440.1	Barley	mitochondrion, plastid	75.37	71.86
TraesCS4B01G107700.2	Wheat	mitochondrion	74.88	70.9
GSMUA_Achr1P22060_001	Banana	mitochondrion	48.05	50.51
VIT_12s0035g00240.t01	Wine grape	mitochondrion	41.46	42.18
Zm00001d024674_P001	Maize	plastid	22.68	41.7
CDX98651	Canola	mitochondrion	28.29	35.91
CDY50054	Canola	mitochondrion	33.17	35.79
CDX78969	Canola	mitochondrion	33.41	35.77
Bra013439.1-P	Field mustard	mitochondrion	33.41	35.58
CDY01629	Canola	mitochondrion	33.41	34.86
Bra012522.1-P	Field mustard	mitochondrion, plastid	32.93	34.79
AT4G20020.1	Thale cress	mitochondrion	32.68	31.98
Zm00001d045528_P001	Maize	mitochondrion	17.32	31.84
Zm00001d026243_P002	Maize	extracellular	16.83	31.8
Solyc02g079210.2.1	Tomato	plastid	35.12	31.3
PGSC0003DMT400057561	Potato	mitochondrion, plastid	35.61	31.06
Zm00001d026307_P001	Maize	mitochondrion	18.54	30.89
KRH44085	Soybean	mitochondrion, plastid	33.66	29.87
KRH26355	Soybean	mitochondrion	33.41	29.65
Zm00001d048291_P001	Maize	mitochondrion	22.68	22.68
CDY60655	Canola	plastid	32.68	18.56
AT5G44780.1	Thale cress	mitochondrion	32.68	18.53
Bra025105.1-P	Field mustard	mitochondrion	31.95	17.87

Protein Annotations

EnsemblPlants:Zm00001d049043_P001	EnsemblPlants:Zm00001d049043_T001	EnsemblPlantsGene:Zm00001d049043	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016554	PANTHER:PTHR31346	PANTHER:PTHR31346:SF5	ProteinID:AQK49473.1	SEG:seg
SignalP:SignalP-noTM	UniParc:UPI000842A928	UniProt:A0A1D6PRX9	MapMan:16.12.5.1	:	:

Description

Multiple organellar RNA editing factor 1 mitochondrial

Coordinates

chr4:-:13725385..13728436

Molecular Weight (calculated)

44342.9 Da

IEP (calculated)

8.713

GRAVY (calculated)

-0.964

Length

410 amino acids

Sequence
(BLAST)

001: MALALRLRRV LAAASTAAPL LRPSTSVARP CPLVPLASPV APLPLPPWRF LPGGGAGFRS TAAAAARGGT DYGTDDSKIS PDEILFEGCD YNHWLITMDF
101: PDPKPSREEM IETYLQTLAK VVGSYEEAKK RMYAFSTTTY VGFQAVMTEE MSEKFRGLPG VVFILPDSYL YPETKEYGGD KYDNGVITPR PPPVHYSRPS
201: RTDRNRNYRG NYQDGPPQQG NYQNNRPPPE GGYQNNPPQQ GNYQTYRSQQ DGRGYAPQQN YAQGGQDGRG FGRNDYTDRS GYNGPPDFRS QTQYQGHVNP
301: AGQGQGYNNP QERSNFSQGQ GGGFRPGGPS APGSYGQPSA PGSYGQPNTL GNYGQVPPSV NPGGNRVPGV NPSYGGDGRQ GAGPAYGGDN WQRGSGQYPS
401: PGEGQGNWQV

Best Arabidopsis Sequence Match ( AT4G20020.2 )
(BLAST)

001: MAMISHRLRR ALLTATSYVN RSISSSITPA SDFPSVSAAV LKRSVIGRST EVATRAPARL FSTRQYKLYK EGDEITEDTV LFEGCDYNHW LITMDFSKEE
101: TPKSPEEMVA AYEETCAQGL GISVEEAKQR MYACSTTTYQ GFQAIMTEQE SEKFKDLPGV VFILPDSYID PQNKEYGGDK YENGVITHRP PPIQSGRARP
201: RPRFDRSGGG SGGPQNFQRN TQYGQQPPMQ GGGGSYGPQQ GYATPGQGQG TQAPPPFQGG YNQGPRSPPP PYQAGYNQGQ GSPVPPYQAG YNQVQGSPVP
301: PYQGTQSSYG QGGSGNYSQG PQGGYNQGGP RNYNPQGAGN FGPASGAGNL GPAPGAGNPG YGQGYSGPGQ EQNQTFPQAD QRNRDWNNNN PAGQPGSDQF
401: PQGRRY

Arabidopsis Description

MORF1Multiple organellar RNA editing factor 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O49429]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.