Factsheet for Solyc02g079210.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400057561	Potato	mitochondrion, plastid	92.83	90.85
Solyc02g079770.2.1	Tomato	plastid	21.3	43.36
VIT_12s0035g00240.t01	Wine grape	mitochondrion	34.13	38.96
CDX78969	Canola	mitochondrion	30.87	37.08
KRH26355	Soybean	mitochondrion	37.17	37.01
TraesCS4D01G104800.2	Wheat	mitochondrion	33.26	36.78
Os11t0216400-01	Rice	mitochondrion	29.78	36.63
HORVU4Hr1G016440.1	Barley	mitochondrion, plastid	34.13	36.51
TraesCS4A01G203900.1	Wheat	nucleus	32.83	36.47
GSMUA_Achr1P22060_001	Banana	mitochondrion	30.87	36.41
CDY50054	Canola	mitochondrion	30.0	36.32
Bra013439.1-P	Field mustard	mitochondrion	30.22	36.1
CDX98651	Canola	mitochondrion	25.22	35.91
KRH44085	Soybean	mitochondrion, plastid	35.87	35.71
TraesCS4B01G107700.2	Wheat	mitochondrion	33.48	35.57
Zm00001d049043_P001	Maize	mitochondrion	31.3	35.12
Bra012522.1-P	Field mustard	mitochondrion, plastid	29.35	34.79
CDY01629	Canola	mitochondrion	29.57	34.61
Solyc05g054960.2.1	Tomato	plastid	16.74	32.91
Solyc01g066060.2.1	Tomato	plastid	18.48	32.82
Solyc06g008220.2.1	Tomato	plastid	16.74	32.22
EES08356	Sorghum	mitochondrion	31.09	31.92
AT4G20020.1	Thale cress	mitochondrion	28.26	31.03
Solyc10g007180.2.1	Tomato	plastid	21.3	25.06
Solyc12g014230.1.1	Tomato	nucleus	22.61	24.24
CDY60655	Canola	plastid	30.0	19.11
AT5G44780.1	Thale cress	mitochondrion	29.13	18.53
Bra025105.1-P	Field mustard	mitochondrion	29.13	18.28

Protein Annotations

EnsemblPlants:Solyc02g079210.2.1	EnsemblPlantsGene:Solyc02g079210.2	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016554	PANTHER:PTHR31346	PANTHER:PTHR31346:SF5	SEG:seg	UniParc:UPI000276886B	UniProt:K4B9E5
MapMan:16.12.5.1	:	:	:	:	:

Description

No Description!

Coordinates

chr2:-:43819780..43823388

Molecular Weight (calculated)

51513.2 Da

IEP (calculated)

8.020

GRAVY (calculated)

-1.126

Length

460 amino acids

Sequence
(BLAST)

001: MALYTSRLRR ALPLSSSIFA QTFHQPNLIS PIASLSQCTS TQSNLSKLNR FDFPSQWRLF RSSTISLSSR SRSFDRNPAD DEIGPDTILF EGCDYEHWLI
101: VIDFPKDTQL TREEMIETYV QTAAKVFGSV EEAKKKIYAL STTTYRGFQV LCSEDTSKKF EGLPGVVFVL PDSYIDPVNK EYGGDKYNNG EIIERPPPPQ
201: FQRQGSRPRR GPQYQQGNYR PPQQNYGPAQ GHPPQQNYGA AQGPPPQQNY NAPQGPPPQQ NYGPPRYPPP QQNYGSRQYA PPPQQNYRQP QDLSPQQNYE
301: RPQNPQPNQS YGVPQSVPSQ WNHGLQPKFV PQQIYGPQGA GDHRGPAPPD SNLDAWDNSQ VGWGDSIRSP FPRRDQRGGA PPEQGGFGGV QHYGSQQGGS
401: SEQQTFGDQP LRYGPQFGQN NPRPGGNQNF PPIEQQGNMQ GGEQRTYASS GTMGTDQERY

Best Arabidopsis Sequence Match ( AT4G20020.2 )
(BLAST)

001: MAMISHRLRR ALLTATSYVN RSISSSITPA SDFPSVSAAV LKRSVIGRST EVATRAPARL FSTRQYKLYK EGDEITEDTV LFEGCDYNHW LITMDFSKEE
101: TPKSPEEMVA AYEETCAQGL GISVEEAKQR MYACSTTTYQ GFQAIMTEQE SEKFKDLPGV VFILPDSYID PQNKEYGGDK YENGVITHRP PPIQSGRARP
201: RPRFDRSGGG SGGPQNFQRN TQYGQQPPMQ GGGGSYGPQQ GYATPGQGQG TQAPPPFQGG YNQGPRSPPP PYQAGYNQGQ GSPVPPYQAG YNQVQGSPVP
301: PYQGTQSSYG QGGSGNYSQG PQGGYNQGGP RNYNPQGAGN FGPASGAGNL GPAPGAGNPG YGQGYSGPGQ EQNQTFPQAD QRNRDWNNNN PAGQPGSDQF
401: PQGRRY

Arabidopsis Description

MORF1Multiple organellar RNA editing factor 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O49429]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.