Factsheet for VIT_12s0035g00240.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 3
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98651	Canola	mitochondrion	36.72	45.82
CDY50054	Canola	mitochondrion	42.93	45.53
CDX78969	Canola	mitochondrion	42.93	45.17
Bra013439.1-P	Field mustard	mitochondrion	42.93	44.94
Os11t0216400-01	Rice	mitochondrion	40.2	43.32
Bra012522.1-P	Field mustard	mitochondrion, plastid	41.69	43.3
CDY01629	Canola	mitochondrion	42.18	43.26
Zm00001d049043_P001	Maize	mitochondrion	42.18	41.46
AT4G20020.1	Thale cress	mitochondrion	42.93	41.29
GSMUA_Achr1P22060_001	Banana	mitochondrion	39.95	41.28
TraesCS4D01G104800.2	Wheat	mitochondrion	42.18	40.87
HORVU4Hr1G016440.1	Barley	mitochondrion, plastid	43.42	40.7
TraesCS4A01G203900.1	Wheat	nucleus	41.69	40.58
KRH44085	Soybean	mitochondrion, plastid	45.66	39.83
TraesCS4B01G107700.2	Wheat	mitochondrion	42.68	39.72
VIT_19s0014g04710.t01	Wine grape	plastid	22.33	39.3
KRH26355	Soybean	mitochondrion	44.42	38.74
EES08356	Sorghum	mitochondrion	41.19	37.05
Solyc02g079210.2.1	Tomato	plastid	38.96	34.13
PGSC0003DMT400057561	Potato	mitochondrion, plastid	39.45	33.83
VIT_05s0077g01880.t01	Wine grape	mitochondrion	21.34	33.08
VIT_05s0049g01500.t01	Wine grape	plastid	18.11	31.33
VIT_07s0005g03930.t01	Wine grape	mitochondrion, plastid	17.87	30.51
VIT_09s0002g01100.t01	Wine grape	mitochondrion	13.4	25.47
VIT_19s0014g01550.t01	Wine grape	plastid	23.82	22.8
AT5G44780.1	Thale cress	mitochondrion	38.46	21.44
CDY60655	Canola	plastid	37.22	20.78
Bra025105.1-P	Field mustard	mitochondrion	35.48	19.51

Protein Annotations

EntrezGene:100243925	wikigene:100243925	MapMan:16.12.5.1	ProteinID:CCB55083	ProteinID:CCB55083.1	UniProt:F6HK80
EMBL:FN595990	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016554
EntrezGene:LOC100243925	wikigene:LOC100243925	PANTHER:PTHR31346	PANTHER:PTHR31346:SF5	TIGR:TC66856	UniParc:UPI0002108DF3
ArrayExpress:VIT_12s0035g00240	EnsemblPlantsGene:VIT_12s0035g00240	EnsemblPlants:VIT_12s0035g00240.t01	unigene:Vvi.1727	RefSeq:XP_002269948	RefSeq:XP_002269948.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr12:-:19492540..19495622

Molecular Weight (calculated)

44921.9 Da

IEP (calculated)

6.779

GRAVY (calculated)

-1.106

Length

403 amino acids

Sequence
(BLAST)

001: MALYSLRLRQ ALKTLTPLLG HRTPLPQVCA LPAVESCGVI RLLPATNLQS RPFRSSPIWL SSSRSFNNQN EEIGPDTILF EGCDYNHWLI TMDFPKDPKP
101: TPEEMVETYV QTLAKGLNIS VEEAKLKMYA CSTTTYTGFQ AVMTEEESEK FRGLPGVVFI LPDSYINPAT KEYGGDKYIN GTIIPRPPPV QYGRTGGRYG
201: DRNRNTERPR YDRQGGPMPN RQGNPPYDNR GSMQGDGGNY GAPQNYPPQQ NYGPAGQGPM PMSNRDYAHG GRDTYQGERR DTMPPYQGNY NQGQQGNYHP
301: QERRDFSQGA QRNYAPPDQR DVRGDNRNYN PQHSGNYGQG TGGSYGQGMG SGPSGYGQAQ QGHGEGQRFS QVDQRNDMQD EQRNYPPTGN TNQCDETIAC
401: NEG

Best Arabidopsis Sequence Match ( AT4G20020.2 )
(BLAST)

001: MAMISHRLRR ALLTATSYVN RSISSSITPA SDFPSVSAAV LKRSVIGRST EVATRAPARL FSTRQYKLYK EGDEITEDTV LFEGCDYNHW LITMDFSKEE
101: TPKSPEEMVA AYEETCAQGL GISVEEAKQR MYACSTTTYQ GFQAIMTEQE SEKFKDLPGV VFILPDSYID PQNKEYGGDK YENGVITHRP PPIQSGRARP
201: RPRFDRSGGG SGGPQNFQRN TQYGQQPPMQ GGGGSYGPQQ GYATPGQGQG TQAPPPFQGG YNQGPRSPPP PYQAGYNQGQ GSPVPPYQAG YNQVQGSPVP
301: PYQGTQSSYG QGGSGNYSQG PQGGYNQGGP RNYNPQGAGN FGPASGAGNL GPAPGAGNPG YGQGYSGPGQ EQNQTFPQAD QRNRDWNNNN PAGQPGSDQF
401: PQGRRY

Arabidopsis Description

MORF1Multiple organellar RNA editing factor 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O49429]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.