Factsheet for VIT_19s0014g04710.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P33150_001	Banana	cytosol	53.71	88.49
CDX97960	Canola	cytosol	58.08	86.36
CDY20996	Canola	cytosol	57.64	86.27
Bra016835.1-P	Field mustard	plastid	72.05	71.12
AT1G11430.1	Thale cress	plastid	72.05	71.12
CDY37239	Canola	cytosol	40.61	70.99
KRH10700	Soybean	nucleus, plastid	68.56	70.72
EES14516	Sorghum	plastid	69.43	70.67
Zm00001d024674_P001	Maize	plastid	68.12	69.96
TraesCS7A01G307000.1	Wheat	plastid	68.12	68.72
KRH21628	Soybean	nucleus, plastid	67.25	68.44
PGSC0003DMT400055883	Potato	plastid	67.25	68.14
TraesCS7B01G207300.1	Wheat	plastid	67.69	67.98
CDY49781	Canola	plastid	71.18	67.92
Solyc02g079770.2.1	Tomato	plastid	66.81	67.7
Os08t0139100-01	Rice	plastid	67.69	67.69
TraesCS7D01G303900.1	Wheat	plastid	67.25	67.54
CDY57037	Canola	mitochondrion	71.62	63.32
HORVU7Hr1G073170.2	Barley	plastid	68.56	62.06
Bra019853.1-P	Field mustard	plastid	70.74	60.22
VIT_05s0077g01880.t01	Wine grape	mitochondrion	37.12	32.69
VIT_05s0049g01500.t01	Wine grape	plastid	30.57	30.04
VIT_07s0005g03930.t01	Wine grape	mitochondrion, plastid	30.57	29.66
VIT_09s0002g01100.t01	Wine grape	mitochondrion	24.02	25.94
VIT_12s0035g00240.t01	Wine grape	mitochondrion	39.3	22.33
VIT_19s0014g01550.t01	Wine grape	plastid	32.31	17.58

Protein Annotations

EntrezGene:100255654	wikigene:100255654	MapMan:16.12.5.1	ProteinID:CCB46452	ProteinID:CCB46452.1	UniProt:F6H2H2
EMBL:FN595229	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009941
GO:GO:0009987	GO:GO:0016554	GO:GO:1900865	EntrezGene:LOC100255654	wikigene:LOC100255654	PANTHER:PTHR31346
PANTHER:PTHR31346:SF3	TIGR:TC54051	TIGR:TC55883	UniParc:UPI00015C800C	ArrayExpress:VIT_19s0014g04710	EnsemblPlantsGene:VIT_19s0014g04710
EnsemblPlants:VIT_19s0014g04710.t01	unigene:Vvi.7770	RefSeq:XP_002283211	RefSeq:XP_002283211.1	RefSeq:XP_003634693	RefSeq:XP_003634693.1
RefSeq:XP_010644312.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr19:+:5032669..5035046

Molecular Weight (calculated)

26118.7 Da

IEP (calculated)

9.649

GRAVY (calculated)

-0.848

Length

229 amino acids

Sequence
(BLAST)

001: MATTYTTTSF TFKTLISSSH PNPRSTVQLA FPLRFNSISR PRLTSRSGAV RPIRAAVSDG EYSSKRSSSN EPRETIMLPG CDYNHWLIVM EFPKDPAPTR
101: EQMIDTYLNT LATVLGSMEE AKKNMYAFST TTYTGFQCTV SEETSEKFKG LPGVLWVLPD SYIDVKNKDY GGDKYINGEI IPCTYPTYQP KQRRESKYES
201: RRYERRRDGP PAEKRRPRQE ASRSESNSG

Best Arabidopsis Sequence Match ( AT1G11430.1 )
(BLAST)

001: MASFTTTSSS SLLLKTLLPV SHLNRFSTLS GIRVGDSWTP LLRNISTAGS RRRVAIVKAA TVDSDYSSKR SNSNEQRETI MLPGCDYNHW LIVMEFPKDP
101: APSRDQMIDT YLNTLATVLG SMEEAKKNMY AFSTTTYTGF QCTIDEETSE KFKGLPGVLW VLPDSYIDVK NKDYGGDKYI NGEIIPCTYP TYQPKQRNNT
201: KYQSKRYERK RDGPPPPEQR KPRQEPAASD SS

Arabidopsis Description

MORF9Multiple organellar RNA editing factor 9, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LPZ1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.