CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH10700	Soybean	nucleus, plastid	96.0	97.3
GSMUA_Achr8P33150_001	Banana	cytosol	52.89	85.61
CDY20996	Canola	cytosol	57.78	84.97
CDX97960	Canola	cytosol	57.78	84.42
CDY37239	Canola	cytosol	40.0	68.7
VIT_19s0014g04710.t01	Wine grape	plastid	68.44	67.25
Bra016835.1-P	Field mustard	plastid	68.89	66.81
AT1G11430.1	Thale cress	plastid	68.44	66.38
PGSC0003DMT400055883	Potato	plastid	66.67	66.37
Solyc02g079770.2.1	Tomato	plastid	66.22	65.93
TraesCS7A01G307000.1	Wheat	plastid	65.78	65.2
TraesCS7B01G207300.1	Wheat	plastid	65.78	64.91
TraesCS7D01G303900.1	Wheat	plastid	65.33	64.47
EES14516	Sorghum	plastid	64.44	64.44
Os08t0139100-01	Rice	plastid	65.33	64.19
Zm00001d024674_P001	Maize	plastid	63.56	64.13
CDY49781	Canola	plastid	68.0	63.75
CDY57037	Canola	mitochondrion	68.44	59.46
HORVU7Hr1G073170.2	Barley	plastid	66.22	58.89
Bra019853.1-P	Field mustard	plastid	67.56	56.51
KRG92352	Soybean	mitochondrion, plastid	36.44	34.6
KRH02286	Soybean	mitochondrion	35.56	32.39
KRH31686	Soybean	mitochondrion	30.67	30.94
KRH50805	Soybean	mitochondrion	34.22	30.92
KRH34443	Soybean	plastid	36.0	30.68
KRH27318	Soybean	nucleus	33.78	20.94
KRH26355	Soybean	mitochondrion	40.44	19.7
KRH44085	Soybean	mitochondrion, plastid	39.56	19.26
KRH21995	Soybean	plastid	34.22	19.2

Protein Annotations

EMBL:ACUP02008360	EMBL:BT098629	EnsemblPlants:KRH21628	EnsemblPlantsGene:GLYMA_13G249900	EntrezGene:100788853	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016554	PANTHER:PTHR31346	PANTHER:PTHR31346:SF3
ProteinID:KRH21628	ProteinID:KRH21628.1	ProteinID:KRH21629.1	SEG:seg	UniParc:UPI0001B1709D	UniProt:C6TLP0
MapMan:16.12.5.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:35758654..35760398

Molecular Weight (calculated)

25482.0 Da

IEP (calculated)

9.257

GRAVY (calculated)

-0.773

Length

225 amino acids

Sequence
(BLAST)

001: MATVTFSFSA KTLTLPYHPK TPISNFTPVT NLRLPPSIVT RTRNCNRIRA ALDGDFSAKR SSSSNNNDQR ETIMLPGCDY NHWLIVMEFP KDPAPTREQM
101: IDTYLDTLAT VLGSMEEAKK NMYAFSTTTY TGFQCTVDEA TSEKFKGLPG VLWVLPDSYI DVKNKDYGGD KYINGEIIPC KYPTYQPKRS APKNESRRYE
201: RRRDGPPPDR RRPRQEAAAS DSSST

Best Arabidopsis Sequence Match ( AT1G11430.1 )
(BLAST)

001: MASFTTTSSS SLLLKTLLPV SHLNRFSTLS GIRVGDSWTP LLRNISTAGS RRRVAIVKAA TVDSDYSSKR SNSNEQRETI MLPGCDYNHW LIVMEFPKDP
101: APSRDQMIDT YLNTLATVLG SMEEAKKNMY AFSTTTYTGF QCTIDEETSE KFKGLPGVLW VLPDSYIDVK NKDYGGDKYI NGEIIPCTYP TYQPKQRNNT
201: KYQSKRYERK RDGPPPPEQR KPRQEPAASD SS

Arabidopsis Description

MORF9Multiple organellar RNA editing factor 9, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LPZ1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.