Factsheet for Solyc02g079770.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400055883	Potato	plastid	97.79	97.79
CDX97960	Canola	cytosol	56.19	82.47
GSMUA_Achr8P33150_001	Banana	cytosol	50.44	82.01
CDY20996	Canola	cytosol	54.87	81.05
CDY37239	Canola	cytosol	38.94	67.18
KRH10700	Soybean	nucleus, plastid	65.93	67.12
VIT_19s0014g04710.t01	Wine grape	plastid	67.7	66.81
KRH21628	Soybean	nucleus, plastid	65.93	66.22
Bra016835.1-P	Field mustard	plastid	67.26	65.52
AT1G11430.1	Thale cress	plastid	65.93	64.22
CDY49781	Canola	plastid	67.7	63.75
EES14516	Sorghum	plastid	62.83	63.11
Zm00001d024674_P001	Maize	plastid	61.5	62.33
Os08t0139100-01	Rice	plastid	62.83	62.01
TraesCS7A01G307000.1	Wheat	plastid	61.5	61.23
TraesCS7B01G207300.1	Wheat	plastid	61.06	60.53
TraesCS7D01G303900.1	Wheat	plastid	60.62	60.09
CDY57037	Canola	mitochondrion	65.93	57.53
Bra019853.1-P	Field mustard	plastid	66.81	56.13
HORVU7Hr1G073170.2	Barley	plastid	61.95	55.34
Solyc01g066060.2.1	Tomato	plastid	37.17	32.43
Solyc05g054960.2.1	Tomato	plastid	31.86	30.77
Solyc06g008220.2.1	Tomato	plastid	32.3	30.54
Solyc02g079210.2.1	Tomato	plastid	43.36	21.3
Solyc10g007180.2.1	Tomato	plastid	34.51	19.95
Solyc12g014230.1.1	Tomato	nucleus	34.51	18.18

Protein Annotations

EnsemblPlants:Solyc02g079770.2.1	EnsemblPlantsGene:Solyc02g079770.2	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016554	PANTHER:PTHR31346	PANTHER:PTHR31346:SF3	SEG:seg	UniParc:UPI0002768C10	UniProt:K4B9J8
MapMan:16.12.5.1	:	:	:	:	:

Description

No Description!

Coordinates

chr2:+:44227647..44229717

Molecular Weight (calculated)

25400.0 Da

IEP (calculated)

8.973

GRAVY (calculated)

-0.629

Length

226 amino acids

Sequence
(BLAST)

001: MAALKLPSFS KTLNPNSQFQ NLPKTPTFLL SLSYPFLTTS LSSIPPSTSS RFPVVRAISD GEYSSKRSSN SDERETIMLP GCDYNHWLIV MEFPKDPAPT
101: REQMIDTYLD TLATVLGSME EAKKNMYAFS TTTYTGFQCT VSEETSEKFK GLPGVLWVLP DSYIDVKNKD YGGDKYINGE IIPCQYPTYQ PKQANRTRSK
201: SKAYVRRRDG PPPERTRRAA APESSS

Best Arabidopsis Sequence Match ( AT1G11430.1 )
(BLAST)

001: MASFTTTSSS SLLLKTLLPV SHLNRFSTLS GIRVGDSWTP LLRNISTAGS RRRVAIVKAA TVDSDYSSKR SNSNEQRETI MLPGCDYNHW LIVMEFPKDP
101: APSRDQMIDT YLNTLATVLG SMEEAKKNMY AFSTTTYTGF QCTIDEETSE KFKGLPGVLW VLPDSYIDVK NKDYGGDKYI NGEIIPCTYP TYQPKQRNNT
201: KYQSKRYERK RDGPPPPEQR KPRQEPAASD SS

Arabidopsis Description

MORF9Multiple organellar RNA editing factor 9, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LPZ1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.