Factsheet for Solyc06g008220.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g110190.2.1
Solyc03g078380.1.1
Solyc03g096760.1.1
Solyc03g096770.1.1
Solyc03g096780.1.1
Solyc03g113740.2.1
Solyc06g072990.1.1
Solyc09g082580.2.1
Solyc10g054080.1.1
Solyc11g005270.1.1
Solyc11g044880.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32580.1	Solyc03g113740.2.1	AT3G48150.1	21798944
AT1G32580.1	Solyc03g096760.1.1	AT3G49580.1	21798944
AT1G32580.1	Solyc03g096770.1.1	AT3G49580.1	21798944
AT1G32580.1	Solyc03g096780.1.1	AT3G49580.1	21798944
AT1G32580.1	Solyc06g072990.1.1	AT3G49580.1	21798944
AT2G35240.1	Solyc03g096760.1.1	AT3G49580.1	21798944
AT2G35240.1	Solyc03g096770.1.1	AT3G49580.1	21798944
AT2G35240.1	Solyc03g096780.1.1	AT3G49580.1	21798944
AT2G35240.1	Solyc06g072990.1.1	AT3G49580.1	21798944
AT2G35240.1	Solyc09g082580.2.1	AT4G14740.1	21798944
AT2G35240.1	Solyc01g110190.2.1	AT4G39050.1	21798944
AT2G35240.1	Solyc10g054080.1.1	AT4G39050.1	21798944
AT2G35240.1	Solyc11g044880.1.1	AT4G39050.1	21798944
AT2G35240.1	Solyc03g078380.1.1	AT5G13810.1	21798944
AT2G35240.1	Solyc11g005270.1.1	AT5G13810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400038117	Potato	plastid	92.05	95.24
Os06t0116600-01	Rice	mitochondrion	61.92	89.7
GSMUA_Achr4P27580_001	Banana	cytosol	53.97	87.76
GSMUA_Achr6P01260_001	Banana	cytosol	53.97	87.76
HORVU0Hr1G032330.2	Barley	cytosol	39.75	87.16
EES11377	Sorghum	mitochondrion, plastid	68.62	75.93
TraesCS2D01G434600.1	Wheat	plastid	68.2	75.81
TraesCS2B01G457700.1	Wheat	plastid	67.78	75.7
TraesCS2A01G437600.1	Wheat	plastid	67.36	75.23
Zm00001d026243_P002	Maize	extracellular	67.78	74.65
Zm00001d045528_P001	Maize	mitochondrion	65.27	69.96
KRG92352	Soybean	mitochondrion, plastid	69.04	69.62
KRH31686	Soybean	mitochondrion	64.85	69.51
VIT_07s0005g03930.t01	Wine grape	mitochondrion, plastid	68.62	69.49
TraesCS7D01G045100.1	Wheat	mitochondrion, plastid	66.95	68.97
TraesCS4A01G437100.1	Wheat	mitochondrion	67.36	68.51
EER87743	Sorghum	mitochondrion	63.18	68.02
TraesCS7A01G050200.1	Wheat	mitochondrion	66.53	67.37
HORVU7Hr1G008880.2	Barley	plastid	67.36	67.08
AT1G32580.1	Thale cress	mitochondrion, plastid	61.51	64.19
KRH34443	Soybean	plastid	70.29	63.64
TraesCS6D01G007100.1	Wheat	mitochondrion	64.02	63.49
AT2G35240.1	Thale cress	mitochondrion, plastid	61.51	63.36
GSMUA_Achr2P17930_001	Banana	mitochondrion, plastid	67.36	62.16
Solyc05g054960.2.1	Tomato	plastid	60.67	61.97
TraesCS6A01G005300.1	Wheat	plastid	64.44	61.6
TraesCS6B01G010000.1	Wheat	plastid	64.44	61.35
HORVU6Hr1G002030.1	Barley	plastid	65.27	60.7
HORVU5Hr1G072150.9	Barley	mitochondrion	43.51	60.47
HORVU1Hr1G057120.1	Barley	plastid	32.64	50.98
TraesCS3A01G476100.2	Wheat	plastid	33.89	45.51
HORVU2Hr1G040170.17	Barley	mitochondrion	42.68	37.36
Solyc02g079770.2.1	Tomato	plastid	30.54	32.3
Solyc01g066060.2.1	Tomato	plastid	34.73	32.05
Solyc10g007180.2.1	Tomato	plastid	35.98	21.99
Solyc12g014230.1.1	Tomato	nucleus	36.4	20.28
Solyc02g079210.2.1	Tomato	plastid	32.22	16.74

Protein Annotations

EnsemblPlants:Solyc06g008220.2.1	EnsemblPlantsGene:Solyc06g008220.2	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016554	PANTHER:PTHR31346	PANTHER:PTHR31346:SF9	SEG:seg	UniParc:UPI0002766538	UniProt:K4C3K2
MapMan:16.12.5.1	:	:	:	:	:

Description

No Description!

Coordinates

chr6:+:2097959..2101060

Molecular Weight (calculated)

26709.6 Da

IEP (calculated)

8.177

GRAVY (calculated)

-0.612

Length

239 amino acids

Sequence
(BLAST)

001: MLTTAAAMMA GSATPFPSTS VYLAAGELSL SIPVPKPTNF AGRSSTFRRN SILHSIRVEN PNSGRVNTIV CKANRSAYSP LNSGSNYGDR PPTEMAPLFP
101: GCDYEHWLIV MDKPGGEGAT KQQMIDCYIQ TLAKVVGSEE EAKKKIYNVS CERYFGFGCE IDEETSNKLE GLPGVLFVLP DSYVDPENKD YGAELFVNGE
201: IVQRSPERQK RVEPVPQRAQ DRPRYNDRTR YVRRRENTR

Best Arabidopsis Sequence Match ( AT1G32580.1 )
(BLAST)

001: MAKTLARSTA SRITKRLIST SGATTPSPSY ILSRRSTPVF SHAVGFISSL NRFTTIRTRM DRSGGSYSPL KSGSNFSDRA PTEMAPLFPG CDYEHWLIVM
101: DKPGGENATK QQMIDCYVQT LAKIIGSEEE AKKKIYNVSC ERYFGFGCEI DEETSNKLEG LPGVLFILPD SYVDQENKDY GAELFVNGEI VQRPPERQRK
201: IIELTTQRTN DKPKYHDKTR YVRRRENMR

Arabidopsis Description

MORF5Multiple organellar RNA editing factor 5, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9C7Y2]
SUBAcon: [plastid,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.