Factsheet for Solyc10g007180.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 7
nucleus 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400054809	Potato	mitochondrion	96.93	92.21
Solyc12g014230.1.1	Tomato	nucleus	74.94	68.3
CDX97626	Canola	plastid	55.5	59.62
CDX98522	Canola	plastid	56.27	59.3
KRH27318	Soybean	nucleus	54.48	58.68
CDX82454	Canola	mitochondrion, plastid	58.31	58.61
CDX75801	Canola	mitochondrion, plastid	59.34	58.15
Bra027285.1-P	Field mustard	plastid	58.31	56.72
CDY20096	Canola	plastid	45.27	56.37
Bra021584.1-P	Field mustard	plastid	47.57	55.86
VIT_19s0014g01550.t01	Wine grape	plastid	59.59	55.34
Bra001578.1-P	Field mustard	plastid	52.43	55.26
EER92766	Sorghum	mitochondrion	53.2	53.61
KRH21995	Soybean	plastid	54.73	53.37
Os09t0509000-01	Rice	plastid	52.94	52.27
TraesCS5B01G290000.1	Wheat	mitochondrion, plastid	44.76	51.93
TraesCS5B01G289900.1	Wheat	nucleus	53.45	51.86
Os09t0132600-01	Rice	mitochondrion	52.43	51.51
TraesCS5D01G298300.2	Wheat	mitochondrion	52.94	51.49
EER92767	Sorghum	mitochondrion	45.52	51.3
HORVU5Hr1G077020.3	Barley	mitochondrion	53.2	51.11
TraesCS5A01G291000.1	Wheat	mitochondrion	51.92	51.01
Zm00001d048291_P001	Maize	mitochondrion	50.9	48.54
GSMUA_Achr6P08230_001	Banana	mitochondrion	49.87	48.15
TraesCS7B01G160200.1	Wheat	mitochondrion	49.62	46.63
GSMUA_AchrUn_...	Banana	mitochondrion	47.83	46.29
TraesCS7A01G262500.1	Wheat	mitochondrion	48.85	45.91
Solyc01g066060.2.1	Tomato	plastid	30.18	45.56
CDY32326	Canola	cytosol	40.66	45.04
TraesCS7D01G263300.1	Wheat	mitochondrion	49.62	45.01
HORVU7Hr1G054850.2	Barley	plastid	49.1	44.34
GSMUA_Achr10P...	Banana	mitochondrion	49.1	43.84
AT1G53260.1	Thale cress	cytosol	28.9	41.7
Solyc06g008220.2.1	Tomato	plastid	21.99	35.98
Solyc05g054960.2.1	Tomato	plastid	20.97	35.04
Solyc02g079770.2.1	Tomato	plastid	19.95	34.51
OQU89756	Sorghum	plastid	32.48	29.67
Solyc02g079210.2.1	Tomato	plastid	25.06	21.3

Protein Annotations

EnsemblPlants:Solyc10g007180.2.1	EnsemblPlantsGene:Solyc10g007180.2	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016554	PANTHER:PTHR31346	PANTHER:PTHR31346:SF4	SEG:seg	UniParc:UPI0001D6535C	UniProt:K4CXP8
MapMan:16.12.5.1	:	:	:	:	:

Description

No Description!

Coordinates

chr10:-:1623464..1627207

Molecular Weight (calculated)

43505.8 Da

IEP (calculated)

9.598

GRAVY (calculated)

-1.031

Length

391 amino acids

Sequence
(BLAST)

001: MATRYLTRSL LTTLSRSYTT LSLSTPLPSS FSLLRFRPLI AVAANLRTFT PATLTAATSF RGFATRQTSS SLNDPNPNWS NRPPKETILL DGCDFEHWLV
101: VMEKPEGDPT RDEIIDSYIK TLATIVGSEE EARMKIYSVS TRHYFAFGAL VSEELSYKLK ELPKVRWVLP DSYLDVKNKD YGGEPFINGQ AVPYDPKYHE
201: EWVRNNARAN ERNRRNDRPR NFDRSRNFER RREMQNPGSS MGGGPPNMRN APPPNMGEMQ QQQQPNMGGM QQQQPNMGGM HQQQQPNMGG MHQPGMGGPP
301: PNYGGGPPRN YGGAPPNNYG GAPNNQYNGG PNNGGGMPYQ TGPGPNQNYA SGGNHYQNPN MPPPSQNYAP NTPGGNLHQN QNMPGRDPNY Q

Best Arabidopsis Sequence Match ( AT3G15000.1 )
(BLAST)

001: MATHTISRSI LCRPAKSLSF LFTRSFASSA PLAKSPASSL LSRSRPLVAA FSSVFRGGLV SVKGLSTQAT SSSLNDPNPN WSNRPPKETI LLDGCDFEHW
101: LVVVEPPQGE PTRDEIIDSY IKTLAQIVGS EDEARMKIYS VSTRCYYAFG ALVSEDLSHK LKELSNVRWV LPDSYLDVRN KDYGGEPFID GKAVPYDPKY
201: HEEWIRNNAR ANERNRRNDR PRNNDRSRNF ERRRENMAGG PPPQRPPMGG PPPPPHIGGS APPPPHMGGS APPPPHMGQN YGPPPPNNMG GPRHPPPYGA
301: PPQNNMGGPR PPQNYGGTPP PNYGGAPPAN NMGGAPPPNY GGGPPPQYGA VPPPQYGGAP PQNNNYQQQG SGMQQPQYQN NYPPNRDGSG NPYQG

Arabidopsis Description

MORF8Multiple organellar RNA editing factor 8, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LKA5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.