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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 6
  • mitochondrion 4
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:mitochondrion
iPSORT:mitochondrion
MultiLoc:plastid
Plant-mPloc:nucleus
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
 plastid: 22908117
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc01g110190.2.1
Solyc03g078380.1.1
Solyc03g096760.1.1
Solyc03g096770.1.1
Solyc03g096780.1.1
Solyc03g113740.2.1
Solyc06g072990.1.1
Solyc09g082580.2.1
Solyc10g054080.1.1
Solyc11g005270.1.1
Solyc11g044880.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G32580.1 Solyc03g113740.2.1 AT3G48150.1 21798944
AT1G32580.1 Solyc03g096760.1.1 AT3G49580.1 21798944
AT1G32580.1 Solyc03g096770.1.1 AT3G49580.1 21798944
AT1G32580.1 Solyc03g096780.1.1 AT3G49580.1 21798944
AT1G32580.1 Solyc06g072990.1.1 AT3G49580.1 21798944
AT2G35240.1 Solyc03g096760.1.1 AT3G49580.1 21798944
AT2G35240.1 Solyc03g096770.1.1 AT3G49580.1 21798944
AT2G35240.1 Solyc03g096780.1.1 AT3G49580.1 21798944
AT2G35240.1 Solyc06g072990.1.1 AT3G49580.1 21798944
AT2G35240.1 Solyc09g082580.2.1 AT4G14740.1 21798944
AT2G35240.1 Solyc01g110190.2.1 AT4G39050.1 21798944
AT2G35240.1 Solyc10g054080.1.1 AT4G39050.1 21798944
AT2G35240.1 Solyc11g044880.1.1 AT4G39050.1 21798944
AT2G35240.1 Solyc03g078380.1.1 AT5G13810.1 21798944
AT2G35240.1 Solyc11g005270.1.1 AT5G13810.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400060429 Potato plastid 97.86 97.86
Os06t0116600-01 Rice mitochondrion 58.12 82.42
GSMUA_Achr6P01260_001 Banana cytosol 51.71 82.31
GSMUA_Achr4P27580_001 Banana cytosol 50.85 80.95
HORVU0Hr1G032330.2 Barley cytosol 35.9 77.06
CDX79529 Canola cytosol 39.32 76.03
Zm00001d026243_P002 Maize extracellular 61.11 65.9
CDY37719 Canola plastid 62.39 65.77
Zm00001d045528_P001 Maize mitochondrion 62.39 65.47
EER87743 Sorghum mitochondrion 61.97 65.32
Bra021852.1-P Field mustard plastid 61.97 65.32
EES11377 Sorghum mitochondrion, plastid 60.26 65.28
TraesCS2D01G434600.1 Wheat plastid 59.83 65.12
TraesCS2B01G457700.1 Wheat plastid 58.97 64.49
TraesCS2A01G437600.1 Wheat plastid 58.97 64.49
CDY23734 Canola plastid 62.82 64.47
VIT_07s0005g03930.t01 Wine grape mitochondrion, plastid 64.53 63.98
CDY17174 Canola plastid 62.82 63.91
Bra005495.1-P Field mustard plastid 62.82 63.91
TraesCS4A01G437100.1 Wheat mitochondrion 63.68 63.4
CDY19491 Canola plastid 62.39 63.2
TraesCS7D01G045100.1 Wheat mitochondrion, plastid 62.39 62.93
TraesCS7A01G050200.1 Wheat mitochondrion 62.82 62.29
HORVU7Hr1G008880.2 Barley plastid 63.25 61.67
AT1G32580.1 Thale cress mitochondrion, plastid 59.4 60.7
Solyc06g008220.2.1 Tomato plastid 61.97 60.67
AT2G35240.1 Thale cress mitochondrion, plastid 58.97 59.48
TraesCS6D01G007100.1 Wheat mitochondrion 59.83 58.09
TraesCS6B01G010000.1 Wheat plastid 61.97 57.77
TraesCS6A01G005300.1 Wheat plastid 61.54 57.6
HORVU6Hr1G002030.1 Barley plastid 61.97 56.42
HORVU5Hr1G072150.9 Barley mitochondrion 41.45 56.4
GSMUA_Achr2P17930_001 Banana mitochondrion, plastid 61.54 55.6
HORVU1Hr1G057120.1 Barley plastid 31.2 47.71
TraesCS3A01G476100.2 Wheat plastid 35.04 46.07
HORVU2Hr1G040170.17 Barley mitochondrion 40.17 34.43
Solyc01g066060.2.1 Tomato plastid 35.47 32.05
Solyc02g079770.2.1 Tomato plastid 30.77 31.86
Solyc10g007180.2.1 Tomato plastid 35.04 20.97
Solyc12g014230.1.1 Tomato nucleus 34.19 18.65
Solyc02g079210.2.1 Tomato plastid 32.91 16.74
Protein Annotations
EnsemblPlants:Solyc05g054960.2.1EnsemblPlantsGene:Solyc05g054960.2GO:GO:0006139GO:GO:0008150GO:GO:0008152GO:GO:0009987
GO:GO:0016554PANTHER:PTHR31346PANTHER:PTHR31346:SF9SEG:segUniParc:UPI0002766E9AUniProt:K4C2H3
MapMan:16.12.5.1:::::
Description
No Description!
Coordinates
chr5:+:64746010..64749011
Molecular Weight (calculated)
26420.3 Da
IEP (calculated)
9.061
GRAVY (calculated)
-0.648
Length
234 amino acids
Sequence
(BLAST)
001: MASKITKSIS RTLYTYRFST RFISSASSPS ITQPPSLPAV GSSPQPSFLL SHSLLPTNPN GLKPFSLNTV RFRVNRSGSS PYTPGTGDRA PTEMAPLFPG
101: CDYEHWLIVM DKPGGEGAHK QQMIDCYVQT LAKVLGSEEE AKKKIYNVSC ERYFGFGCEV DEETANKMEG LPGVLFVLPD SYVDPEYKDY GAELFVNGEI
201: IQRSPERQRR VEPVPQRNDR IRPNRYNRRR DNMR
Best Arabidopsis Sequence Match ( AT1G32580.1 )
(BLAST)
001: MAKTLARSTA SRITKRLIST SGATTPSPSY ILSRRSTPVF SHAVGFISSL NRFTTIRTRM DRSGGSYSPL KSGSNFSDRA PTEMAPLFPG CDYEHWLIVM
101: DKPGGENATK QQMIDCYVQT LAKIIGSEEE AKKKIYNVSC ERYFGFGCEI DEETSNKLEG LPGVLFILPD SYVDQENKDY GAELFVNGEI VQRPPERQRK
201: IIELTTQRTN DKPKYHDKTR YVRRRENMR
Arabidopsis Description
MORF5Multiple organellar RNA editing factor 5, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9C7Y2]
SUBAcon: [mitochondrion,plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.