Factsheet for Solyc01g066060.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400043314	Potato	mitochondrion, plastid	96.91	96.54
CDY34929	Canola	cytosol	40.54	75.0
Bra001218.1-P	Field mustard	cytosol	40.54	74.47
VIT_05s0077g01880.t01	Wine grape	mitochondrion	72.97	72.69
CDX74079	Canola	cytosol	40.93	72.11
Os03t0581600-01	Rice	mitochondrion	61.78	70.18
AT3G06790.2	Thale cress	mitochondrion	66.02	70.08
Bra040292.1-P	Field mustard	mitochondrion, plastid	66.41	69.64
CDY08033	Canola	mitochondrion	57.53	69.3
GSMUA_Achr8P22480_001	Banana	mitochondrion	68.73	68.73
KRH50805	Soybean	mitochondrion	65.64	68.27
Zm00001d026307_P001	Maize	mitochondrion	62.55	65.85
KRH02286	Soybean	mitochondrion	62.55	65.59
EES12861	Sorghum	mitochondrion	61.78	65.57
TraesCS6B01G344700.2	Wheat	mitochondrion	62.93	64.43
TraesCS6D01G294000.1	Wheat	mitochondrion	62.55	64.29
GSMUA_Achr11P...	Banana	mitochondrion	62.55	64.03
TraesCS6A01G314700.1	Wheat	mitochondrion	62.16	63.89
HORVU6Hr1G077460.3	Barley	plastid	61.78	60.38
Solyc02g079770.2.1	Tomato	plastid	32.43	37.17
Solyc05g054960.2.1	Tomato	plastid	32.05	35.47
Solyc06g008220.2.1	Tomato	plastid	32.05	34.73
Solyc10g007180.2.1	Tomato	plastid	45.56	30.18
Solyc12g014230.1.1	Tomato	nucleus	45.17	27.27
Solyc02g079210.2.1	Tomato	plastid	32.82	18.48

Protein Annotations

EnsemblPlants:Solyc01g066060.2.1	EnsemblPlantsGene:Solyc01g066060.2	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016554	PANTHER:PTHR31346	PANTHER:PTHR31346:SF1	SEG:seg	UniParc:UPI0002762942	UniProt:K4AWK9
MapMan:16.12.5.1	:	:	:	:	:

Description

No Description!

Coordinates

chr1:-:73007887..73012255

Molecular Weight (calculated)

29282.1 Da

IEP (calculated)

8.582

GRAVY (calculated)

-0.764

Length

259 amino acids

Sequence
(BLAST)

001: MALFATRRTL ASTIYRVLSS SSSSSSPSSS RFRFSLPLFF NPQYYPSEQF VSTRPKSSGS GYSPLNDPSP NWSNRPPKET ILLDGCDYEH WLIVMEFPDP
101: KPSEEDMINA YVKTIAAVVG SEEEAKKKIY SVCTTTYTGF GVLISEELSY KVKDLPGVLW VLPDSYLDVP NKDYGGDQFI DGKVIHRPQY RFNQNQSTRP
201: RPRPRYDRRR ETMQVERREP IQRGAWEPNQ QHPAQPVSIE GQNFSHGTGG PAGSQGNNS

Best Arabidopsis Sequence Match ( AT3G06790.2 )
(BLAST)

001: MALISTRRTL STLLNKTLSS STSYSSSFPT LSSRSRFAMP LIEKVSSSRT SLGPCYISTR PKTSGSGYSP LNDPSPNWSN RPPKETILLD GCDYEHWLIV
101: MEFTDPKPTE EEMINSYVKT LTSVLGCEEE AKKKIYSVCT STYTGFGALI SEELSCKVKA LPGVLWVLPD SYLDVPNKDY GGDLYVEGKV IPRPQYRFTE
201: QRHTRPRPRP RYDRRRETMQ VERREPSMGL HSPVNPGEFN KPSA

Arabidopsis Description

MORF3Multiple organellar RNA editing factor 3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q84JZ6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.