Factsheet for TraesCS6D01G007100.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G177600.1
TraesCS1B01G202600.1
TraesCS1D01G176100.1
TraesCS5A01G056700.2
TraesCS5A01G377600.1
TraesCS5B01G060100.2
TraesCS5B01G381200.1
TraesCS5D01G067900.2
TraesCS5D01G387600.1
TraesCS6A01G251400.1
TraesCS6B01G273900.1
TraesCS6D01G233200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32580.1	TraesCS6A01G251400.1	AT3G48150.1	21798944
AT1G32580.1	TraesCS6B01G273900.1	AT3G48150.1	21798944
AT1G32580.1	TraesCS6D01G233200.1	AT3G48150.1	21798944
AT2G35240.1	TraesCS5A01G056700.2	AT4G14740.1	21798944
AT2G35240.1	TraesCS5A01G377600.1	AT4G14740.1	21798944
AT2G35240.1	TraesCS5B01G060100.2	AT4G14740.1	21798944
AT2G35240.1	TraesCS5B01G381200.1	AT4G14740.1	21798944
AT2G35240.1	TraesCS5D01G067900.2	AT4G14740.1	21798944
AT2G35240.1	TraesCS5D01G387600.1	AT4G14740.1	21798944
AT2G35240.1	TraesCS1A01G177600.1	AT4G39050.1	21798944
AT2G35240.1	TraesCS1B01G202600.1	AT4G39050.1	21798944
AT2G35240.1	TraesCS1D01G176100.1	AT4G39050.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G032330.2	Barley	cytosol	43.98	97.25
Os06t0116600-01	Rice	mitochondrion	64.32	93.94
TraesCS6A01G005300.1	Wheat	plastid	91.7	88.4
TraesCS6B01G010000.1	Wheat	plastid	91.7	88.05
HORVU6Hr1G002030.1	Barley	plastid	91.7	85.99
GSMUA_Achr6P01260_001	Banana	cytosol	51.45	84.35
GSMUA_Achr4P27580_001	Banana	cytosol	50.62	82.99
CDX79529	Canola	cytosol	41.49	82.64
TraesCS7D01G045100.1	Wheat	mitochondrion, plastid	78.42	81.47
EER87743	Sorghum	mitochondrion	73.86	80.18
Zm00001d045528_P001	Maize	mitochondrion	73.44	79.37
TraesCS2D01G434600.1	Wheat	plastid	67.22	75.35
CDY58181	Canola	cytosol	51.04	73.21
Bra017328.1-P	Field mustard	cytosol	54.36	70.43
PGSC0003DMT400038117	Potato	plastid	63.07	65.8
VIT_05s0049g01500.t01	Wine grape	plastid	63.49	65.67
KRH31686	Soybean	mitochondrion	60.58	65.47
CDY23734	Canola	plastid	61.41	64.91
CDY37719	Canola	plastid	59.75	64.86
Bra021852.1-P	Field mustard	plastid	59.75	64.86
Solyc06g008220.2.1	Tomato	plastid	63.49	64.02
VIT_07s0005g03930.t01	Wine grape	mitochondrion, plastid	62.66	63.98
Bra005495.1-P	Field mustard	plastid	61.0	63.91
CDY19491	Canola	plastid	60.58	63.2
CDY17174	Canola	plastid	60.17	63.04
KRG92352	Soybean	mitochondrion, plastid	61.41	62.45
Bra017613.1-P	Field mustard	plastid	17.43	61.76
PGSC0003DMT400060429	Potato	plastid	58.92	60.68
GSMUA_Achr2P17930_001	Banana	mitochondrion, plastid	64.73	60.23
CDX84224	Canola	mitochondrion, plastid	57.26	60.0
Solyc05g054960.2.1	Tomato	plastid	58.09	59.83
Bra036402.1-P	Field mustard	mitochondrion, plastid	54.77	59.19
AT1G32580.1	Thale cress	mitochondrion, plastid	56.02	58.95
CDY65831	Canola	mitochondrion, plastid	54.36	58.74
CDY31675	Canola	plastid	56.85	58.55
Bra005357.1-P	Field mustard	plastid	56.85	58.55
KRH34443	Soybean	plastid	62.24	56.82
AT2G35240.1	Thale cress	mitochondrion, plastid	53.94	56.03
CDX79597	Canola	plastid	47.72	49.36
Bra023005.1-P	Field mustard	endoplasmic reticulum	18.67	48.39
CDX84615	Canola	mitochondrion	29.88	40.22
TraesCS6D01G294000.1	Wheat	mitochondrion	34.02	32.54
TraesCS7D01G303900.1	Wheat	plastid	29.88	31.58
TraesCS5D01G298300.2	Wheat	mitochondrion	33.61	20.15
TraesCS7D01G263300.1	Wheat	mitochondrion	33.61	18.79
TraesCS4D01G104800.2	Wheat	mitochondrion	31.12	18.03

Protein Annotations

EnsemblPlants:TraesCS6D01G007100.1

EnsemblPlantsGene:TraesCS6D01G007100

PANTHER:PTHR31346

PANTHER:PTHR31346:SF9

SEG:seg

MapMan:16.12.5.1

Description

No Description!

Coordinates

chr6D:-:2955771..2958294

Molecular Weight (calculated)

26600.6 Da

IEP (calculated)

9.375

GRAVY (calculated)

-0.603

Length

241 amino acids

Sequence
(BLAST)

001: MAAAAAMARR LLSPTTTSHS TTARLLVSRR LASAPCFPRA PAAAAKEMLR PAAVASSSAF FLRGAGGARG MARRPGGGDG YAPARGGDRA PTEMAPLFPG
101: CDYEHWLIVM DKPGGEGASK HQMIDCYIHT LAKVLGSEEE AKRKIYNVSC ERYFGFGCEI DEETSNKLEG IPGVLFVLPD SYVDPEHKDY GAELFVNGEI
201: VQRSPERQRR VEPVPQRASD RPRYNDRTRY ARRRENQQQQ R

Best Arabidopsis Sequence Match ( AT1G32580.1 )
(BLAST)

001: MAKTLARSTA SRITKRLIST SGATTPSPSY ILSRRSTPVF SHAVGFISSL NRFTTIRTRM DRSGGSYSPL KSGSNFSDRA PTEMAPLFPG CDYEHWLIVM
101: DKPGGENATK QQMIDCYVQT LAKIIGSEEE AKKKIYNVSC ERYFGFGCEI DEETSNKLEG LPGVLFILPD SYVDQENKDY GAELFVNGEI VQRPPERQRK
201: IIELTTQRTN DKPKYHDKTR YVRRRENMR

Arabidopsis Description

MORF5Multiple organellar RNA editing factor 5, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9C7Y2]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.