CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70521
CDX72718
CDX78539
CDX90305
CDY08148
CDY12116
CDY16256
CDY22394
CDY29764
CDY36868
CDY36869
CDY50683
CDY67732
CDY70634

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35240.1	CDY08148	AT3G49580.1	21798944
AT2G35240.1	CDY16256	AT4G14740.1	21798944
AT2G35240.1	CDY29764	AT4G14740.1	21798944
AT2G35240.1	CDY36868	AT4G14740.1	21798944
AT2G35240.1	CDY36869	AT4G14740.1	21798944
AT2G35240.1	CDY50683	AT4G14740.1	21798944
AT2G35240.1	CDX72718	AT4G39050.1	21798944
AT2G35240.1	CDX90305	AT4G39050.1	21798944
AT2G35240.1	CDY12116	AT4G39050.1	21798944
AT2G35240.1	CDY22394	AT4G39050.1	21798944
AT2G35240.1	CDX70521	AT5G13810.1	21798944
AT2G35240.1	CDX78539	AT5G13810.1	21798944
AT2G35240.1	CDY67732	AT5G13810.1	21798944
AT2G35240.1	CDY70634	AT5G13810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84615	Canola	mitochondrion	69.1	89.94
Bra023005.1-P	Field mustard	endoplasmic reticulum	29.18	73.12
GSMUA_Achr6P01260_001	Banana	cytosol	44.21	70.07
GSMUA_Achr4P27580_001	Banana	cytosol	43.35	68.71
CDY58181	Canola	cytosol	48.93	67.86
Os06t0116600-01	Rice	mitochondrion	45.92	64.85
HORVU0Hr1G032330.2	Barley	cytosol	29.61	63.3
CDX79529	Canola	cytosol	32.62	62.81
CDY65831	Canola	mitochondrion, plastid	56.22	58.74
CDX84224	Canola	mitochondrion, plastid	57.51	58.26
CDY31675	Canola	plastid	58.37	58.12
AT2G35240.1	Thale cress	mitochondrion, plastid	57.51	57.76
Bra017613.1-P	Field mustard	plastid	16.31	55.88
Zm00001d045528_P001	Maize	mitochondrion	51.5	53.81
VIT_05s0049g01500.t01	Wine grape	plastid	53.65	53.65
EER87743	Sorghum	mitochondrion	51.07	53.6
CDY37719	Canola	plastid	49.79	52.25
CDY23734	Canola	plastid	51.07	52.19
CDY17174	Canola	plastid	50.64	51.3
TraesCS7D01G045100.1	Wheat	mitochondrion, plastid	51.07	51.29
TraesCS7A01G050200.1	Wheat	mitochondrion	51.93	51.27
CDY19491	Canola	plastid	50.64	51.08
TraesCS2D01G434600.1	Wheat	plastid	46.78	50.7
Zm00001d026243_P002	Maize	extracellular	47.21	50.69
TraesCS4A01G437100.1	Wheat	mitochondrion	51.07	50.64
HORVU5Hr1G072150.9	Barley	mitochondrion	37.34	50.58
EES11377	Sorghum	mitochondrion, plastid	46.78	50.46
TraesCS2A01G437600.1	Wheat	plastid	45.92	50.0
TraesCS2B01G457700.1	Wheat	plastid	45.92	50.0
HORVU7Hr1G008880.2	Barley	plastid	50.64	49.17
TraesCS6A01G005300.1	Wheat	plastid	51.93	48.4
TraesCS6D01G007100.1	Wheat	mitochondrion	49.36	47.72
TraesCS6B01G010000.1	Wheat	plastid	50.64	47.01
HORVU6Hr1G002030.1	Barley	plastid	51.07	46.3
GSMUA_Achr2P17930_001	Banana	mitochondrion, plastid	51.07	45.95
TraesCS3A01G476100.2	Wheat	plastid	30.47	39.89
HORVU1Hr1G057120.1	Barley	plastid	26.18	39.87
CDX97960	Canola	cytosol	24.89	37.66
CDY20996	Canola	cytosol	24.46	37.25
CDX74079	Canola	cytosol	21.89	34.69
CDY08033	Canola	mitochondrion	30.9	33.49
CDY34929	Canola	cytosol	19.74	32.86
CDX72924	Canola	mitochondrion	24.46	31.15
CDX96416	Canola	mitochondrion	24.89	30.53
HORVU2Hr1G040170.17	Barley	mitochondrion	35.19	30.04
CDY37239	Canola	cytosol	16.31	29.01
CDX68262	Canola	mitochondrion	23.61	28.95
CDY65020	Canola	mitochondrion	23.18	28.42
CDY49781	Canola	plastid	28.33	27.5
CDY57037	Canola	mitochondrion	27.04	24.32
CDY20096	Canola	plastid	30.04	22.29
CDX98651	Canola	mitochondrion	28.76	20.74
CDX97626	Canola	plastid	31.76	20.33
CDX98522	Canola	plastid	31.76	19.95
CDX82454	Canola	mitochondrion, plastid	32.19	19.28
CDX75801	Canola	mitochondrion, plastid	31.76	18.55
CDX78969	Canola	mitochondrion	29.18	17.75
CDY50054	Canola	mitochondrion	27.9	17.11
CDY32326	Canola	cytosol	25.32	16.71
CDY01629	Canola	mitochondrion	27.47	16.29
CDY60655	Canola	plastid	24.89	8.03

Protein Annotations

EnsemblPlants:CDX79597	EnsemblPlantsGene:GSBRNA2T00132367001	PANTHER:PTHR31346	PANTHER:PTHR31346:SF7	ProteinID:CDX79597	ProteinID:CDX79597.1
SEG:seg	UniParc:UPI0004EE011A	MapMan:16.12.5.1	:	:	:

Description

BnaC03g19330D

Coordinates

chrLK031818:-:1023284..1024408

Molecular Weight (calculated)

26523.6 Da

IEP (calculated)

10.254

GRAVY (calculated)

-0.653

Length

233 amino acids

Sequence
(BLAST)

001: MANTLSRSTA SRVANRFFST SKSLAPSPSN LISHRSSQTL FHAVGFNPSS STLDDILQTQ KIRPRVVHRS SERHSPRKSR SKFSCRPPTT EISPLPSGCD
101: YKHWLIVIDK PGGEYASKEQ MIGCYVQTLA KIVGSKEEAK RNIYNVSCEK YFAFGCEIDE ETSNRLKGIP GVRYVLPDSY VDPEYKDYGG KLFLNGEVVP
201: RPPERQRRIV RFMTPILRYN DRTRNVRGRE SML

Best Arabidopsis Sequence Match ( AT1G32580.1 )
(BLAST)

001: MAKTLARSTA SRITKRLIST SGATTPSPSY ILSRRSTPVF SHAVGFISSL NRFTTIRTRM DRSGGSYSPL KSGSNFSDRA PTEMAPLFPG CDYEHWLIVM
101: DKPGGENATK QQMIDCYVQT LAKIIGSEEE AKKKIYNVSC ERYFGFGCEI DEETSNKLEG LPGVLFILPD SYVDQENKDY GAELFVNGEI VQRPPERQRK
201: IIELTTQRTN DKPKYHDKTR YVRRRENMR

Arabidopsis Description

MORF5Multiple organellar RNA editing factor 5, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9C7Y2]
SUBAcon: [plastid,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.