CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, mitochondrion

Predictor Summary:

plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70521
CDX72718
CDX78539
CDX90305
CDY08148
CDY12116
CDY16256
CDY22394
CDY29764
CDY36868
CDY36869
CDY50683
CDY67732
CDY70634

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35240.1	CDY08148	AT3G49580.1	21798944
AT2G35240.1	CDY16256	AT4G14740.1	21798944
AT2G35240.1	CDY29764	AT4G14740.1	21798944
AT2G35240.1	CDY36868	AT4G14740.1	21798944
AT2G35240.1	CDY36869	AT4G14740.1	21798944
AT2G35240.1	CDY50683	AT4G14740.1	21798944
AT2G35240.1	CDX72718	AT4G39050.1	21798944
AT2G35240.1	CDX90305	AT4G39050.1	21798944
AT2G35240.1	CDY12116	AT4G39050.1	21798944
AT2G35240.1	CDY22394	AT4G39050.1	21798944
AT2G35240.1	CDX70521	AT5G13810.1	21798944
AT2G35240.1	CDX78539	AT5G13810.1	21798944
AT2G35240.1	CDY67732	AT5G13810.1	21798944
AT2G35240.1	CDY70634	AT5G13810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005357.1-P	Field mustard	plastid	96.96	95.3
CDY31675	Canola	plastid	96.52	94.87
CDY58181	Canola	cytosol	64.78	88.69
AT2G35240.1	Thale cress	mitochondrion, plastid	85.22	84.48
GSMUA_Achr4P27580_001	Banana	cytosol	53.48	83.67
GSMUA_Achr6P01260_001	Banana	cytosol	53.04	82.99
Os06t0116600-01	Rice	mitochondrion	57.39	80.0
CDY65831	Canola	mitochondrion, plastid	76.09	78.48
CDX79529	Canola	cytosol	40.87	77.69
HORVU0Hr1G032330.2	Barley	cytosol	36.52	77.06
CDY37719	Canola	plastid	64.78	67.12
CDY23734	Canola	plastid	66.52	67.11
VIT_05s0049g01500.t01	Wine grape	plastid	67.83	66.95
CDY17174	Canola	plastid	66.52	66.52
CDY19491	Canola	plastid	66.09	65.8
TraesCS2D01G434600.1	Wheat	plastid	60.87	65.12
TraesCS2B01G457700.1	Wheat	plastid	60.0	64.49
TraesCS2A01G437600.1	Wheat	plastid	60.0	64.49
EES11377	Sorghum	mitochondrion, plastid	60.0	63.89
Zm00001d026243_P002	Maize	extracellular	60.0	63.59
EER87743	Sorghum	mitochondrion	61.3	63.51
TraesCS4A01G437100.1	Wheat	mitochondrion	64.35	62.98
TraesCS7D01G045100.1	Wheat	mitochondrion, plastid	63.48	62.93
Zm00001d045528_P001	Maize	mitochondrion	60.87	62.78
TraesCS7A01G050200.1	Wheat	mitochondrion	64.35	62.71
HORVU7Hr1G008880.2	Barley	plastid	63.91	61.25
TraesCS6A01G005300.1	Wheat	plastid	63.04	58.0
TraesCS6B01G010000.1	Wheat	plastid	63.04	57.77
CDX79597	Canola	plastid	58.26	57.51
TraesCS6D01G007100.1	Wheat	mitochondrion	60.0	57.26
HORVU5Hr1G072150.9	Barley	mitochondrion	42.17	56.4
HORVU6Hr1G002030.1	Barley	plastid	61.74	55.25
GSMUA_Achr2P17930_001	Banana	mitochondrion, plastid	61.3	54.44
CDX84615	Canola	mitochondrion	39.13	50.28
HORVU1Hr1G057120.1	Barley	plastid	33.04	49.67
TraesCS3A01G476100.2	Wheat	plastid	34.35	44.38
CDX97960	Canola	cytosol	26.96	40.26
CDY20996	Canola	cytosol	26.52	39.87
CDX74079	Canola	cytosol	24.35	38.1
CDY08033	Canola	mitochondrion	34.78	37.21
CDY34929	Canola	cytosol	22.61	37.14
HORVU2Hr1G040170.17	Barley	mitochondrion	41.3	34.8
CDX72924	Canola	mitochondrion	25.22	31.69
CDX96416	Canola	mitochondrion	25.22	30.53
CDY49781	Canola	plastid	31.74	30.42
CDX68262	Canola	mitochondrion	24.35	29.47
CDY37239	Canola	cytosol	16.52	29.01
CDY65020	Canola	mitochondrion	23.48	28.42
CDY57037	Canola	mitochondrion	30.43	27.03
CDY20096	Canola	plastid	33.04	24.2
CDX97626	Canola	plastid	37.83	23.9
CDX98522	Canola	plastid	37.83	23.45
CDX82454	Canola	mitochondrion, plastid	37.39	22.11
CDX75801	Canola	mitochondrion, plastid	37.83	21.8
CDX98651	Canola	mitochondrion	28.26	20.12
CDX78969	Canola	mitochondrion	29.57	17.75
CDY50054	Canola	mitochondrion	29.13	17.63
CDY32326	Canola	cytosol	25.65	16.71
CDY01629	Canola	mitochondrion	28.26	16.54
CDY60655	Canola	plastid	26.52	8.45

Protein Annotations

EnsemblPlants:CDX84224	EnsemblPlantsGene:GSBRNA2T00141278001	PANTHER:PTHR31346	PANTHER:PTHR31346:SF7	ProteinID:CDX84224	ProteinID:CDX84224.1
SEG:seg	UniParc:UPI0004EEF8FE	MapMan:16.12.5.1	:	:	:

Description

BnaC04g09860D

Coordinates

chrLK031836:+:821517..822877

Molecular Weight (calculated)

26095.9 Da

IEP (calculated)

9.343

GRAVY (calculated)

-0.683

Length

230 amino acids

Sequence
(BLAST)

001: MAKALSRSTA SRVANRLFLT SRSAAPSHST LISRRSSPTL FHAIGFIPNS TRLTTIRTRM DRSGGSYSPL NSGSNFSDRA PTEMAPLFPG CDYEHWLIVM
101: DKPGGENATR QQMIDCYVQT LAKIVGSEEE AKRKIYNVSC ERYFGFGCEI DEETSNKLEG IPGVLFVLPD SYVDPEYKDY GAELFVNGEV VPRPPERQRK
201: MVELTTHRSS DRPNKYNDRT RNVRRRENMR

Best Arabidopsis Sequence Match ( AT2G35240.1 )
(BLAST)

001: MAKTLSRSTA SCVAKRFFST SNAVASPSPL PSHLISRRFS PTIFHAVGYI PALTRFTTIR TRMDRSGGSY SPLKSGSNFS DRPPTEMAPL FPGCDYEHWL
101: IVMEKPGGEN AQKQQMIDCY VQTLAKIVGS EEEARKKIYN VSCERYFGFG CEIDEETSNK LEGLPGVLFV LPDSYVDPEF KDYGAELFVN GEVVPRPPER
201: QRRMVELTNQ RGSDKPKYHD RIRNVRRREN MR

Arabidopsis Description

MORF6MORF6 [Source:UniProtKB/TrEMBL;Acc:A0A178VRA7]
SUBAcon: [plastid,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.