CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 4
plastid 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69849
CDX86457
CDX96988
CDY31293
CDY33994
CDY58518

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G15000.1	CDX86457	AT3G27960.1	21798944
AT3G15000.1	CDY58518	AT3G27960.1	21798944
AT3G15000.1	CDX69849	AT5G10270.1	12678503
AT3G15000.1	CDX96988	AT5G10270.1	12678503
AT3G15000.1	CDY31293	AT5G64960.1	12678503
AT3G15000.1	CDY33994	AT5G64960.1	12678503

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97626	Canola	plastid	94.88	96.7
Bra027285.1-P	Field mustard	plastid	98.38	90.8
CDX82454	Canola	mitochondrion, plastid	84.37	80.46
AT3G15000.1	Thale cress	plastid	85.44	80.25
CDX75801	Canola	mitochondrion, plastid	86.25	80.2
CDY20096	Canola	plastid	60.65	71.66
CDY32326	Canola	cytosol	60.65	63.74
VIT_19s0014g01550.t01	Wine grape	plastid	71.16	62.71
KRH27318	Soybean	nucleus	58.49	59.78
Solyc10g007180.2.1	Tomato	plastid	59.3	56.27
KRH21995	Soybean	plastid	60.65	56.11
EER92766	Sorghum	mitochondrion	57.95	55.41
PGSC0003DMT400039805	Potato	plastid	60.11	55.34
PGSC0003DMT400054809	Potato	mitochondrion	59.57	53.77
Os09t0509000-01	Rice	plastid	56.33	52.78
EER92767	Sorghum	mitochondrion	49.33	52.74
Os09t0132600-01	Rice	mitochondrion	56.06	52.26
Solyc12g014230.1.1	Tomato	nucleus	60.38	52.21
TraesCS5D01G298300.2	Wheat	mitochondrion	54.72	50.5
TraesCS5B01G289900.1	Wheat	nucleus	54.72	50.37
Zm00001d048291_P001	Maize	mitochondrion	55.53	50.24
TraesCS5A01G291000.1	Wheat	mitochondrion	53.64	50.0
TraesCS5B01G290000.1	Wheat	mitochondrion, plastid	45.28	49.85
HORVU5Hr1G077020.3	Barley	mitochondrion	54.45	49.63
CDY08033	Canola	mitochondrion	28.03	48.37
TraesCS7B01G160200.1	Wheat	mitochondrion	53.91	48.08
CDX74079	Canola	cytosol	18.87	47.62
TraesCS7A01G262500.1	Wheat	mitochondrion	53.37	47.6
CDY34929	Canola	cytosol	17.52	46.43
TraesCS7D01G263300.1	Wheat	mitochondrion	53.91	46.4
HORVU7Hr1G054850.2	Barley	plastid	53.64	45.96
CDX79529	Canola	cytosol	14.82	45.45
GSMUA_Achr6P08230_001	Banana	mitochondrion	48.79	44.69
GSMUA_AchrUn_...	Banana	mitochondrion	48.52	44.55
GSMUA_Achr10P...	Banana	mitochondrion	52.29	44.29
CDX96416	Canola	mitochondrion	22.64	44.21
CDY58181	Canola	cytosol	19.68	43.45
CDX72924	Canola	mitochondrion	21.02	42.62
CDX68262	Canola	mitochondrion	20.49	40.0
CDY65020	Canola	mitochondrion	20.49	40.0
CDY20996	Canola	cytosol	15.9	38.56
CDX97960	Canola	cytosol	15.9	38.31
CDX84224	Canola	mitochondrion, plastid	23.45	37.83
CDY31675	Canola	plastid	23.45	37.18
CDY17174	Canola	plastid	22.91	36.96
CDY37719	Canola	plastid	22.1	36.94
CDY19491	Canola	plastid	22.91	36.8
CDY23734	Canola	plastid	22.1	35.96
CDY65831	Canola	mitochondrion, plastid	21.56	35.87
CDX79597	Canola	plastid	19.95	31.76
CDY37239	Canola	cytosol	10.78	30.53
OQU89756	Sorghum	plastid	34.5	29.91
CDY49781	Canola	plastid	19.14	29.58
CDY57037	Canola	mitochondrion	18.6	26.64
CDX84615	Canola	mitochondrion	12.67	26.26
CDX78969	Canola	mitochondrion	25.07	24.28
CDY50054	Canola	mitochondrion	24.26	23.68
CDX98651	Canola	mitochondrion	20.22	23.22
CDY01629	Canola	mitochondrion	23.99	22.65
CDY60655	Canola	plastid	22.91	11.77

Protein Annotations

EnsemblPlants:CDX98522	EnsemblPlantsGene:GSBRNA2T00106166001	PANTHER:PTHR31346	PANTHER:PTHR31346:SF4	ProteinID:CDX98522	ProteinID:CDX98522.1
SEG:seg	UniParc:UPI0004EEB95B	MapMan:16.12.5.1	:	:	:

Description

BnaC05g38530D

Coordinates

chrLK031905:+:744881..746997

Molecular Weight (calculated)

39840.8 Da

IEP (calculated)

9.572

GRAVY (calculated)

-0.821

Length

371 amino acids

Sequence
(BLAST)

001: MATHSISRSI LCRPAKSLSL LFTRSFASSA PLAKAPATSL YTSSLLTRSR PLVAALSSAF RGGLVSVKGL SSQATSSSLN DPSPNWSNRP PKETILLDGC
101: DFEHWLVVVD PPEGDPTRDE IIDSYIKTLA QIVGSEEEAR MKIYSVSTRC YFAFGALVSE DLSHKLKELP KVRWVLPDSY LDVRNKDYGG EPFIDGKAVP
201: YDPKYHEEWI RNNARANERN RRNDRPKNFD RSRNFERRRE NMAGGPPPQR PPMGGPPPPH MGGSAPPPPP MGQNYGQRPP PNYGGPPPPH NNMGGQRPPA
301: NYGGAPPPPP NYGGPPPPNY GGGTPPQNNM GGAPPPNYGG APPPNYGGAP PQNNMGGGGP PNAGCGNPYQ G

Best Arabidopsis Sequence Match ( AT3G15000.1 )
(BLAST)

001: MATHTISRSI LCRPAKSLSF LFTRSFASSA PLAKSPASSL LSRSRPLVAA FSSVFRGGLV SVKGLSTQAT SSSLNDPNPN WSNRPPKETI LLDGCDFEHW
101: LVVVEPPQGE PTRDEIIDSY IKTLAQIVGS EDEARMKIYS VSTRCYYAFG ALVSEDLSHK LKELSNVRWV LPDSYLDVRN KDYGGEPFID GKAVPYDPKY
201: HEEWIRNNAR ANERNRRNDR PRNNDRSRNF ERRRENMAGG PPPQRPPMGG PPPPPHIGGS APPPPHMGGS APPPPHMGQN YGPPPPNNMG GPRHPPPYGA
301: PPQNNMGGPR PPQNYGGTPP PNYGGAPPAN NMGGAPPPNY GGGPPPQYGA VPPPQYGGAP PQNNNYQQQG SGMQQPQYQN NYPPNRDGSG NPYQG

Arabidopsis Description

MORF8Multiple organellar RNA editing factor 8, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LKA5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.