CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96416	Canola	mitochondrion	92.9	89.47
CDX68262	Canola	mitochondrion	89.07	85.79
CDY65020	Canola	mitochondrion	87.43	84.21
AT1G72530.2	Thale cress	mitochondrion	85.79	81.77
VIT_09s0002g01100.t01	Wine grape	mitochondrion	60.11	51.89
CDX79529	Canola	cytosol	20.77	31.41
CDY58181	Canola	cytosol	28.42	30.95
CDY20996	Canola	cytosol	24.04	28.76
CDX74079	Canola	cytosol	22.95	28.57
CDY34929	Canola	cytosol	21.86	28.57
CDX97960	Canola	cytosol	24.04	28.57
CDY08033	Canola	mitochondrion	30.05	25.58
CDY65831	Canola	mitochondrion, plastid	31.15	25.56
CDX84224	Canola	mitochondrion, plastid	31.69	25.22
CDY31675	Canola	plastid	32.24	25.21
CDY23734	Canola	plastid	31.15	25.0
CDY37719	Canola	plastid	30.05	24.77
CDX79597	Canola	plastid	31.15	24.46
CDY17174	Canola	plastid	30.05	23.91
CDY19491	Canola	plastid	30.05	23.81
CDY20096	Canola	plastid	39.34	22.93
CDX97626	Canola	plastid	42.62	21.43
CDY37239	Canola	cytosol	15.3	21.37
CDX98522	Canola	plastid	42.62	21.02
CDX82454	Canola	mitochondrion, plastid	43.17	20.31
CDY49781	Canola	plastid	26.23	20.0
CDX75801	Canola	mitochondrion, plastid	43.17	19.8
CDX84615	Canola	mitochondrion	19.13	19.55
CDY57037	Canola	mitochondrion	26.23	18.53
CDY32326	Canola	cytosol	30.6	15.86
CDX98651	Canola	mitochondrion	25.68	14.55
CDX78969	Canola	mitochondrion	26.78	12.79
CDY50054	Canola	mitochondrion	26.23	12.63
CDY01629	Canola	mitochondrion	25.14	11.7
CDY60655	Canola	plastid	27.87	7.06

Protein Annotations

EnsemblPlants:CDX72924	EnsemblPlantsGene:GSBRNA2T00103348001	PANTHER:PTHR31346	PANTHER:PTHR31346:SF6	PFscan:PS51257	ProteinID:CDX72924
ProteinID:CDX72924.1	SEG:seg	UniParc:UPI0004EE6FBF	MapMan:16.12.5.1	:	:

Description

BnaC06g33720D

Coordinates

chrLK031797:+:1182558..1183357

Molecular Weight (calculated)

20861.2 Da

IEP (calculated)

9.567

GRAVY (calculated)

-0.409

Length

183 amino acids

Sequence
(BLAST)

001: MASIIRRPLN LTAAVRFRLT PLLPFSGSSC SVNSNTTRLS ELIKVPSLVE GCDYKHWLVL MKPPKGYPPR NDIVQGFVKT LSMALGSEEE AKRSIYSVST
101: KYYYAFGCRV HEPLTYKIRS LPDVRWVLPD SYVVDGDSGY GGEPFVDGEV VPYDEKYHAD WLRDLTDEDA ILVKKKPRRK RKK

Best Arabidopsis Sequence Match ( AT1G72530.1 )
(BLAST)

001: MARIIRRPLN LTAAVRFRLS PLSPFSGNSG SINSETTSWS ELIRVPSLVE GCDYKHWLVL MKPPNGYPTR NHIVQSFVET LAMALGSEEE AKRSIYSVST
101: KYYYAFGCRI HEPLTYKIRS LPDVKWVLPD SFIVDGDNRY GGEPFVDGEV VPYDEKYHAD WLRDQTDEDA KSGVVKKKHR RKRKKKLI

Arabidopsis Description

Plastid developmental protein DAG [Source:UniProtKB/TrEMBL;Acc:F4IDD2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.