CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

mitochondrion 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69849
CDX86457
CDX96988
CDY31293
CDY33994
CDY58518

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G15000.1	CDX86457	AT3G27960.1	21798944
AT3G15000.1	CDY58518	AT3G27960.1	21798944
AT3G15000.1	CDX69849	AT5G10270.1	12678503
AT3G15000.1	CDX96988	AT5G10270.1	12678503
AT3G15000.1	CDY31293	AT5G64960.1	12678503
AT3G15000.1	CDY33994	AT5G64960.1	12678503

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82454	Canola	mitochondrion, plastid	94.99	97.43
Bra001578.1-P	Field mustard	plastid	89.72	96.5
CDX98522	Canola	plastid	80.2	86.25
CDX97626	Canola	plastid	77.69	85.16
AT3G15000.1	Thale cress	plastid	83.21	84.05
CDY20096	Canola	plastid	62.66	79.62
CDY32326	Canola	cytosol	63.66	71.95
VIT_19s0014g01550.t01	Wine grape	plastid	67.67	64.13
KRH27318	Soybean	nucleus	54.89	60.33
Solyc10g007180.2.1	Tomato	plastid	58.15	59.34
PGSC0003DMT400039805	Potato	plastid	58.4	57.82
PGSC0003DMT400054809	Potato	mitochondrion	58.65	56.93
KRH21995	Soybean	plastid	56.64	56.36
EER92766	Sorghum	mitochondrion	54.14	55.67
Os09t0509000-01	Rice	plastid	54.39	54.8
Solyc12g014230.1.1	Tomato	nucleus	58.4	54.31
Os09t0132600-01	Rice	mitochondrion	53.63	53.77
TraesCS5B01G289900.1	Wheat	nucleus	54.14	53.6
TraesCS5D01G298300.2	Wheat	mitochondrion	53.88	53.48
TraesCS5B01G290000.1	Wheat	mitochondrion, plastid	44.86	53.12
TraesCS5A01G291000.1	Wheat	mitochondrion	52.88	53.02
HORVU5Hr1G077020.3	Barley	mitochondrion	53.88	52.83
EER92767	Sorghum	mitochondrion	45.61	52.45
Zm00001d048291_P001	Maize	mitochondrion	52.13	50.73
CDX74079	Canola	cytosol	18.05	48.98
CDY34929	Canola	cytosol	17.04	48.57
TraesCS7B01G160200.1	Wheat	mitochondrion	50.63	48.56
CDY08033	Canola	mitochondrion	26.07	48.37
TraesCS7A01G262500.1	Wheat	mitochondrion	50.13	48.08
GSMUA_Achr6P08230_001	Banana	mitochondrion	48.12	47.41
TraesCS7D01G263300.1	Wheat	mitochondrion	50.63	46.87
GSMUA_AchrUn_...	Banana	mitochondrion	46.87	46.29
CDX79529	Canola	cytosol	14.04	46.28
HORVU7Hr1G054850.2	Barley	plastid	50.13	46.19
GSMUA_Achr10P...	Banana	mitochondrion	50.13	45.66
CDX72924	Canola	mitochondrion	19.8	43.17
CDX96416	Canola	mitochondrion	20.55	43.16
CDY58181	Canola	cytosol	17.79	42.26
CDX68262	Canola	mitochondrion	19.05	40.0
CDY65020	Canola	mitochondrion	19.05	40.0
CDY20996	Canola	cytosol	15.29	39.87
CDX97960	Canola	cytosol	15.29	39.61
CDX84224	Canola	mitochondrion, plastid	21.8	37.83
CDY31675	Canola	plastid	21.8	37.18
CDY17174	Canola	plastid	21.05	36.52
CDY37719	Canola	plastid	20.3	36.49
CDY19491	Canola	plastid	21.05	36.36
CDY23734	Canola	plastid	20.3	35.53
CDY65831	Canola	mitochondrion, plastid	19.8	35.43
CDY37239	Canola	cytosol	10.78	32.82
CDX79597	Canola	plastid	18.55	31.76
CDY49781	Canola	plastid	18.3	30.42
OQU89756	Sorghum	plastid	32.58	30.37
CDY57037	Canola	mitochondrion	17.79	27.41
CDX84615	Canola	mitochondrion	11.78	26.26
CDX78969	Canola	mitochondrion	23.81	24.8
CDY50054	Canola	mitochondrion	23.06	24.21
CDX98651	Canola	mitochondrion	19.3	23.84
CDY01629	Canola	mitochondrion	22.81	23.16
CDY60655	Canola	plastid	21.55	11.91

Protein Annotations

EnsemblPlants:CDX75801	EnsemblPlantsGene:GSBRNA2T00123756001	PANTHER:PTHR31346	PANTHER:PTHR31346:SF4	ProteinID:CDX75801	ProteinID:CDX75801.1
SEG:seg	UniParc:UPI0004EC6848	MapMan:16.12.5.1	:	:	:

Description

BnaC03g38840D

Coordinates

chrLK031805:+:803994..806879

Molecular Weight (calculated)

43162.3 Da

IEP (calculated)

9.829

GRAVY (calculated)

-0.929

Length

399 amino acids

Sequence
(BLAST)

001: MATHTISRSF LRRPAKSLSS LFARSFASSS APLAKTPASS LSALRSRPLV AALSSVARGG FVSFKGLSTQ ATSSSLNDPN PNWSNRPPKE TILLDGCDFE
101: HWLVVVEPPE GDLTRDEIID GYIKTLAQIV GSEEEARMKI YSVSTRCYFA FGALVSEDLS HKLKELPKVR WVLPDSYLDV RNKDYGGEPF IDGKAVPYDP
201: KYHEEWIRNN ARANERNRRN DRPRNFDRSR NFERRRENMS GGPPPQRTPM GGPPPPPHMG GAAPPPPHMG QNYGGPPSLQ NNMGGQRPPP NYGGAPPQNN
301: MAGQRPPANY GGAPPPNYGG GPPPNYGGAP PQNNMGGAPP PPNYGGAVPP QNSMGGGPPN AGWSGNNNNY QQQSGGMQQP QYQNNYPPNR DGSGNPYQG

Best Arabidopsis Sequence Match ( AT3G15000.1 )
(BLAST)

001: MATHTISRSI LCRPAKSLSF LFTRSFASSA PLAKSPASSL LSRSRPLVAA FSSVFRGGLV SVKGLSTQAT SSSLNDPNPN WSNRPPKETI LLDGCDFEHW
101: LVVVEPPQGE PTRDEIIDSY IKTLAQIVGS EDEARMKIYS VSTRCYYAFG ALVSEDLSHK LKELSNVRWV LPDSYLDVRN KDYGGEPFID GKAVPYDPKY
201: HEEWIRNNAR ANERNRRNDR PRNNDRSRNF ERRRENMAGG PPPQRPPMGG PPPPPHIGGS APPPPHMGGS APPPPHMGQN YGPPPPNNMG GPRHPPPYGA
301: PPQNNMGGPR PPQNYGGTPP PNYGGAPPAN NMGGAPPPNY GGGPPPQYGA VPPPQYGGAP PQNNNYQQQG SGMQQPQYQN NYPPNRDGSG NPYQG

Arabidopsis Description

MORF8Multiple organellar RNA editing factor 8, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LKA5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.