Factsheet for TraesCS5B01G290000.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G274500.1
TraesCS6B01G302000.1
TraesCS6D01G254800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G15000.1	TraesCS6A01G274500.1	AT3G27960.1	21798944
AT3G15000.1	TraesCS6B01G302000.1	AT3G27960.1	21798944
AT3G15000.1	TraesCS6D01G254800.1	AT3G27960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G289900.1	Wheat	nucleus	80.12	67.0
TraesCS7B01G160200.1	Wheat	mitochondrion	66.17	53.61
CDY20096	Canola	plastid	48.66	52.23
Bra021584.1-P	Field mustard	plastid	50.45	51.05
CDX82454	Canola	mitochondrion, plastid	54.01	46.79
GSMUA_AchrUn_...	Banana	mitochondrion	54.9	45.79
CDX98522	Canola	plastid	49.85	45.28
CDX97626	Canola	plastid	48.66	45.05
CDX75801	Canola	mitochondrion, plastid	53.12	44.86
Solyc10g007180.2.1	Tomato	plastid	51.93	44.76
GSMUA_Achr6P08230_001	Banana	mitochondrion	53.71	44.69
AT3G15000.1	Thale cress	plastid	51.93	44.3
Bra027285.1-P	Field mustard	plastid	52.82	44.28
GSMUA_Achr10P...	Banana	mitochondrion	57.27	44.06
KRH27318	Soybean	nucleus	46.88	43.53
PGSC0003DMT400039805	Potato	plastid	51.63	43.18
Bra001578.1-P	Field mustard	plastid	47.18	42.86
PGSC0003DMT400054809	Potato	mitochondrion	52.23	42.82
KRH21995	Soybean	plastid	50.45	42.39
VIT_19s0014g01550.t01	Wine grape	plastid	51.63	41.33
Solyc12g014230.1.1	Tomato	nucleus	52.52	41.26
TraesCS6B01G344700.2	Wheat	mitochondrion	28.19	37.55
CDY32326	Canola	cytosol	38.58	36.83
AT1G53260.1	Thale cress	cytosol	29.38	36.53
TraesCS2B01G457700.1	Wheat	plastid	22.85	35.98
TraesCS7B01G207300.1	Wheat	plastid	21.36	31.58
TraesCS6B01G010000.1	Wheat	plastid	22.55	30.28
TraesCS4B01G107700.2	Wheat	mitochondrion	23.74	18.48

Protein Annotations

EnsemblPlants:TraesCS5B01G290000.1

EnsemblPlantsGene:TraesCS5B01G290000

PANTHER:PTHR31346

PANTHER:PTHR31346:SF4

SEG:seg

MapMan:16.12.5.1

Description

No Description!

Coordinates

chr5B:-:476016445..476020219

Molecular Weight (calculated)

37013.0 Da

IEP (calculated)

9.163

GRAVY (calculated)

-0.897

Length

337 amino acids

Sequence
(BLAST)

001: MASASRALLL SRFSPLPAAA SHSLRPLAAA GSLLPAPLIP SPAAAARRFA TNRPPKETIL LDGCDFEHWL VVMEPPPGEG ANPDIPRDEI IDSYIKTPAQ
101: VVGSEEEARM KIYSVSTRHY FAFGALVSEE LSYKLKELPK VRWVLPDSYL DVRNKDYGGE PFIDGQAVPY DPKYHEEWVI NNRRANEPRH KRGDRPRNFD
201: KRRENTYQSR PAPPSYQSPR PPSQEQNQMP PRDASPVRPT QGPPPPNYQP HAANRQSGYV PAGGPNYQNT SHPGYQGAPT PGYQAGNHGG NMHGVGPSYG
301: GGAQGYQNIG YQEGSGNYNN AAPPTYVGRD GPGRHYQ

Best Arabidopsis Sequence Match ( AT3G15000.1 )
(BLAST)

001: MATHTISRSI LCRPAKSLSF LFTRSFASSA PLAKSPASSL LSRSRPLVAA FSSVFRGGLV SVKGLSTQAT SSSLNDPNPN WSNRPPKETI LLDGCDFEHW
101: LVVVEPPQGE PTRDEIIDSY IKTLAQIVGS EDEARMKIYS VSTRCYYAFG ALVSEDLSHK LKELSNVRWV LPDSYLDVRN KDYGGEPFID GKAVPYDPKY
201: HEEWIRNNAR ANERNRRNDR PRNNDRSRNF ERRRENMAGG PPPQRPPMGG PPPPPHIGGS APPPPHMGGS APPPPHMGQN YGPPPPNNMG GPRHPPPYGA
301: PPQNNMGGPR PPQNYGGTPP PNYGGAPPAN NMGGAPPPNY GGGPPPQYGA VPPPQYGGAP PQNNNYQQQG SGMQQPQYQN NYPPNRDGSG NPYQG

Arabidopsis Description

MORF8Multiple organellar RNA editing factor 8, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LKA5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.