CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 3
plastid 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69849
CDX86457
CDX96988
CDY31293
CDY33994
CDY58518

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G15000.1	CDX86457	AT3G27960.1	21798944
AT3G15000.1	CDY58518	AT3G27960.1	21798944
AT3G15000.1	CDX69849	AT5G10270.1	12678503
AT3G15000.1	CDX96988	AT5G10270.1	12678503
AT3G15000.1	CDY31293	AT5G64960.1	12678503
AT3G15000.1	CDY33994	AT5G64960.1	12678503

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021584.1-P	Field mustard	plastid	86.94	81.98
CDX82454	Canola	mitochondrion, plastid	81.21	65.55
CDX75801	Canola	mitochondrion, plastid	79.62	62.66
CDY32326	Canola	cytosol	69.11	61.47
CDX98522	Canola	plastid	71.66	60.65
CDX97626	Canola	plastid	69.11	59.62
AT3G15000.1	Thale cress	plastid	73.25	58.23
TraesCS5B01G290000.1	Wheat	mitochondrion, plastid	52.23	48.66
VIT_19s0014g01550.t01	Wine grape	plastid	64.65	48.22
KRH27318	Soybean	nucleus	55.41	47.93
Os09t0509000-01	Rice	plastid	58.28	46.21
KRH21995	Soybean	plastid	58.92	46.13
EER92766	Sorghum	mitochondrion	56.05	45.36
Solyc10g007180.2.1	Tomato	plastid	56.37	45.27
TraesCS5B01G289900.1	Wheat	nucleus	57.96	45.16
TraesCS5D01G298300.2	Wheat	mitochondrion	57.64	45.02
Os09t0132600-01	Rice	mitochondrion	57.01	44.97
PGSC0003DMT400039805	Potato	plastid	57.64	44.91
CDY34929	Canola	cytosol	19.75	44.29
HORVU5Hr1G077020.3	Barley	mitochondrion	57.32	44.23
TraesCS5A01G291000.1	Wheat	mitochondrion	56.05	44.22
CDX74079	Canola	cytosol	20.7	44.22
PGSC0003DMT400054809	Potato	mitochondrion	56.37	43.07
CDY08033	Canola	mitochondrion	29.3	42.79
Solyc12g014230.1.1	Tomato	nucleus	58.28	42.66
EER92767	Sorghum	mitochondrion	47.13	42.65
CDX79529	Canola	cytosol	16.24	42.15
CDY58181	Canola	cytosol	22.29	41.67
Zm00001d048291_P001	Maize	mitochondrion	54.14	41.46
TraesCS7B01G160200.1	Wheat	mitochondrion	54.14	40.87
TraesCS7A01G262500.1	Wheat	mitochondrion	53.5	40.38
HORVU7Hr1G054850.2	Barley	plastid	55.1	39.95
TraesCS7D01G263300.1	Wheat	mitochondrion	54.14	39.44
CDX72924	Canola	mitochondrion	22.93	39.34
GSMUA_AchrUn_...	Banana	mitochondrion	50.32	39.11
CDX96416	Canola	mitochondrion	23.57	38.95
GSMUA_Achr10P...	Banana	mitochondrion	52.55	37.67
GSMUA_Achr6P08230_001	Banana	mitochondrion	48.41	37.53
CDX68262	Canola	mitochondrion	21.97	36.32
CDY65020	Canola	mitochondrion	21.66	35.79
CDY20996	Canola	cytosol	16.88	34.64
CDX97960	Canola	cytosol	16.88	34.42
CDX84224	Canola	mitochondrion, plastid	24.2	33.04
CDY37719	Canola	plastid	23.25	32.88
CDY65831	Canola	mitochondrion, plastid	22.93	32.29
CDY17174	Canola	plastid	23.57	32.17
CDY31675	Canola	plastid	23.89	32.05
CDY19491	Canola	plastid	23.57	32.03
CDY23734	Canola	plastid	23.25	32.02
CDX79597	Canola	plastid	22.29	30.04
CDY37239	Canola	cytosol	11.46	27.48
CDY49781	Canola	plastid	20.38	26.67
OQU89756	Sorghum	plastid	35.67	26.17
CDX84615	Canola	mitochondrion	13.38	23.46
CDY57037	Canola	mitochondrion	19.11	23.17
CDX78969	Canola	mitochondrion	25.8	21.15
CDX98651	Canola	mitochondrion	21.66	21.05
CDY50054	Canola	mitochondrion	25.16	20.79
CDY01629	Canola	mitochondrion	24.84	19.85
CDY60655	Canola	plastid	25.8	11.22

Protein Annotations

EnsemblPlants:CDY20096	EnsemblPlantsGene:GSBRNA2T00009947001	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016554	PANTHER:PTHR31346	PANTHER:PTHR31346:SF4	ProteinID:CDY20096	ProteinID:CDY20096.1	SEG:seg
UniParc:UPI0004EF1E49	UniProt:A0A078G425	MapMan:16.12.5.1	:	:	:

Description

BnaA01g29060DBnaA01g29060D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G425]

Coordinates

chrLK032103:+:138035..139640

Molecular Weight (calculated)

34539.2 Da

IEP (calculated)

8.789

GRAVY (calculated)

-1.066

Length

314 amino acids

Sequence
(BLAST)

001: MATRSCLDPS LRLLPSPKPR RLRLSSADPA PSPSPPCLSS QATASSLKDP SPNWSNRPPK ETILLDGCDF EHWLVVVDPP QGDLTRDEII DGYVKTLAQI
101: VGSEEEARMK IYSVSHRCYF AFGALVSEDL SHKLKELPNV RWVLPDSYLD VRNKDYGGEP FIDGRAVPYD HKYHEEWIRN NARANDKNKR NDHRPRNFDK
201: KRRDNMSGGS PPQRPPMGGP PPPQNYGGPP PPPNNMGGQR PPPNFGGAPP PNYGGAPPLN YGGATPQNNM GGGPPPNAGW SGNNYQQQSG GMQQSQYQNN
301: YPPNRDGSGN PYQG

Best Arabidopsis Sequence Match ( AT1G53260.1 )
(BLAST)

001: MKIYSVSHKC YFAFGALVSE DLSHKIKELP KVKWVLPDSY LDGKNKDYGG EPFIDGKAVP YDPKYHEEWI RNNANATNEN RRPRRPRNSD GGRNDRGNQD
101: TGYRRPPPNQ GMGGAPPPPP HIGNNPNMPP HIQPPNMNQN YRGPPPPPNM NQNYQGPPAP NMNQNYQGPP PSNMGQNYQG PPPPNMNQSY QGPPPPNMNQ
201: SYQGPPPSNM GQNYRGPSLP PPNMSQNYEG PPPPNMNGGW SGNYQQNGGY QQQGQGGGMQ QQPYPPNRNQ S

Arabidopsis Description

Putative uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q58G44]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.