CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003876.1-P	Field mustard	mitochondrion	94.74	94.74
CDX68262	Canola	mitochondrion	91.58	91.58
CDX72924	Canola	mitochondrion	84.21	87.43
CDX96416	Canola	mitochondrion	82.11	82.11
AT1G72530.2	Thale cress	mitochondrion	82.11	81.25
VIT_09s0002g01100.t01	Wine grape	mitochondrion	56.84	50.94
CDY20996	Canola	cytosol	23.16	28.76
CDY58181	Canola	cytosol	25.26	28.57
CDX97960	Canola	cytosol	23.16	28.57
CDX79529	Canola	cytosol	17.89	28.1
CDX74079	Canola	cytosol	21.58	27.89
CDY34929	Canola	cytosol	19.47	26.43
CDY65831	Canola	mitochondrion, plastid	28.42	24.22
CDY08033	Canola	mitochondrion	27.37	24.19
CDY31675	Canola	plastid	28.95	23.5
CDX84224	Canola	mitochondrion, plastid	28.42	23.48
CDY23734	Canola	plastid	27.89	23.25
CDX79597	Canola	plastid	28.42	23.18
CDY17174	Canola	plastid	27.89	23.04
CDY37719	Canola	plastid	26.84	22.97
CDY19491	Canola	plastid	27.89	22.94
CDY37239	Canola	cytosol	15.26	22.14
CDY20096	Canola	plastid	35.79	21.66
CDX97626	Canola	plastid	40.0	20.88
CDY49781	Canola	plastid	26.32	20.83
CDX98522	Canola	plastid	40.0	20.49
CDX82454	Canola	mitochondrion, plastid	40.0	19.54
CDX75801	Canola	mitochondrion, plastid	40.0	19.05
CDY57037	Canola	mitochondrion	25.79	18.92
CDX84615	Canola	mitochondrion	17.37	18.44
CDY32326	Canola	cytosol	28.42	15.3
CDX98651	Canola	mitochondrion	23.68	13.93
CDX78969	Canola	mitochondrion	25.26	12.53
CDY50054	Canola	mitochondrion	24.74	12.37
CDY01629	Canola	mitochondrion	23.68	11.45
CDY60655	Canola	plastid	25.26	6.65

Protein Annotations

EnsemblPlants:CDY65020	EnsemblPlantsGene:GSBRNA2T00044023001	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016554	PANTHER:PTHR31346	PANTHER:PTHR31346:SF6	ProteinID:CDY65020	ProteinID:CDY65020.1	SEG:seg
UniParc:UPI0004EE23D6	UniProt:A0A078JEY0	MapMan:16.12.5.1	:	:	:

Description

BnaCnng45730DBnaCnng45730D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JEY0]

Coordinates

chrLK034627:-:17676..18873

Molecular Weight (calculated)

21469.5 Da

IEP (calculated)

9.609

GRAVY (calculated)

-0.646

Length

190 amino acids

Sequence
(BLAST)

001: MASNVRRPSN LTAAAVRFRL APLLPFSGSS GSVNSDTTRC SELIRVPSLV EGCDYKHWLV LMKPPNGYPP RNDIVQGFIR TLAMAQGSDE EAKKSIYSVS
101: TKYYYAFGCR VHEHLTYKIR SLPDVRWVLP DSFIVDGGDS GYGGEPSVDG EVAPYDEKYH ADWLRDQTDE DAKNRLVKKK PRRKRNKKLN

Best Arabidopsis Sequence Match ( AT1G72530.1 )
(BLAST)

001: MARIIRRPLN LTAAVRFRLS PLSPFSGNSG SINSETTSWS ELIRVPSLVE GCDYKHWLVL MKPPNGYPTR NHIVQSFVET LAMALGSEEE AKRSIYSVST
101: KYYYAFGCRI HEPLTYKIRS LPDVKWVLPD SFIVDGDNRY GGEPFVDGEV VPYDEKYHAD WLRDQTDEDA KSGVVKKKHR RKRKKKLI

Arabidopsis Description

Plastid developmental protein DAG [Source:UniProtKB/TrEMBL;Acc:F4IDD2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.