CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70521
CDX72718
CDX78539
CDX90305
CDY08148
CDY12116
CDY16256
CDY22394
CDY29764
CDY36868
CDY36869
CDY50683
CDY67732
CDY70634

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35240.1	CDY08148	AT3G49580.1	21798944
AT2G35240.1	CDY16256	AT4G14740.1	21798944
AT2G35240.1	CDY29764	AT4G14740.1	21798944
AT2G35240.1	CDY36868	AT4G14740.1	21798944
AT2G35240.1	CDY36869	AT4G14740.1	21798944
AT2G35240.1	CDY50683	AT4G14740.1	21798944
AT2G35240.1	CDX72718	AT4G39050.1	21798944
AT2G35240.1	CDX90305	AT4G39050.1	21798944
AT2G35240.1	CDY12116	AT4G39050.1	21798944
AT2G35240.1	CDY22394	AT4G39050.1	21798944
AT2G35240.1	CDX70521	AT5G13810.1	21798944
AT2G35240.1	CDX78539	AT5G13810.1	21798944
AT2G35240.1	CDY67732	AT5G13810.1	21798944
AT2G35240.1	CDY70634	AT5G13810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023005.1-P	Field mustard	endoplasmic reticulum	37.43	72.04
CDX79597	Canola	plastid	89.94	69.1
Bra017613.1-P	Field mustard	plastid	18.99	50.0
CDY58181	Canola	cytosol	38.55	41.07
GSMUA_Achr6P01260_001	Banana	cytosol	33.52	40.82
GSMUA_Achr4P27580_001	Banana	cytosol	32.4	39.46
Os06t0116600-01	Rice	mitochondrion	36.31	39.39
CDY31675	Canola	plastid	51.4	39.32
AT2G35240.1	Thale cress	mitochondrion, plastid	50.84	39.22
CDX84224	Canola	mitochondrion, plastid	50.28	39.13
CDY65831	Canola	mitochondrion, plastid	48.04	38.56
HORVU0Hr1G032330.2	Barley	cytosol	23.46	38.53
Zm00001d045528_P001	Maize	mitochondrion	43.02	34.53
EER87743	Sorghum	mitochondrion	42.46	34.23
CDY23734	Canola	plastid	43.58	34.21
CDY17174	Canola	plastid	43.58	33.91
VIT_05s0049g01500.t01	Wine grape	plastid	44.13	33.91
CDY19491	Canola	plastid	43.58	33.77
CDY37719	Canola	plastid	41.34	33.33
TraesCS7D01G045100.1	Wheat	mitochondrion, plastid	43.02	33.19
CDX79529	Canola	cytosol	22.35	33.06
TraesCS7A01G050200.1	Wheat	mitochondrion	43.58	33.05
TraesCS4A01G437100.1	Wheat	mitochondrion	43.02	32.77
Zm00001d026243_P002	Maize	extracellular	39.11	32.26
HORVU7Hr1G008880.2	Barley	plastid	43.02	32.08
EES11377	Sorghum	mitochondrion, plastid	37.99	31.48
TraesCS2D01G434600.1	Wheat	plastid	37.43	31.16
TraesCS2A01G437600.1	Wheat	plastid	36.87	30.84
TraesCS2B01G457700.1	Wheat	plastid	36.87	30.84
TraesCS6A01G005300.1	Wheat	plastid	41.9	30.0
TraesCS6B01G010000.1	Wheat	plastid	41.9	29.88
TraesCS6D01G007100.1	Wheat	mitochondrion	40.22	29.88
HORVU6Hr1G002030.1	Barley	plastid	41.9	29.18
GSMUA_Achr2P17930_001	Banana	mitochondrion, plastid	41.34	28.57
HORVU5Hr1G072150.9	Barley	mitochondrion	25.14	26.16
CDY08033	Canola	mitochondrion	25.14	20.93
CDX72924	Canola	mitochondrion	19.55	19.13
CDY20996	Canola	cytosol	16.2	18.95
CDX96416	Canola	mitochondrion	20.11	18.95
CDX97960	Canola	cytosol	16.2	18.83
CDX68262	Canola	mitochondrion	19.55	18.42
HORVU1Hr1G057120.1	Barley	plastid	15.08	17.65
CDY65020	Canola	mitochondrion	18.44	17.37
CDY34929	Canola	cytosol	13.41	17.14
CDX74079	Canola	cytosol	13.97	17.01
TraesCS3A01G476100.2	Wheat	plastid	16.2	16.29
HORVU2Hr1G040170.17	Barley	mitochondrion	22.91	15.02
CDY49781	Canola	plastid	20.11	15.0
CDY37239	Canola	cytosol	10.61	14.5
CDX98651	Canola	mitochondrion	25.14	13.93
CDY20096	Canola	plastid	23.46	13.38
CDY57037	Canola	mitochondrion	18.99	13.13
CDX97626	Canola	plastid	26.26	12.91
CDX98522	Canola	plastid	26.26	12.67
CDX82454	Canola	mitochondrion, plastid	26.82	12.34
CDX75801	Canola	mitochondrion, plastid	26.26	11.78
CDX78969	Canola	mitochondrion	25.14	11.75
CDY50054	Canola	mitochondrion	24.02	11.32
CDY01629	Canola	mitochondrion	24.02	10.94
CDY32326	Canola	cytosol	16.76	8.5
CDY60655	Canola	plastid	21.79	5.4

Protein Annotations

EnsemblPlants:CDX84615	EnsemblPlantsGene:GSBRNA2T00141882001	PANTHER:PTHR31346	PANTHER:PTHR31346:SF7	ProteinID:CDX84615	ProteinID:CDX84615.1
SEG:seg	UniParc:UPI0004EEE11C	MapMan:35.1	:	:	:

Description

BnaA03g16150D

Coordinates

chrLK031838:+:387869..388866

Molecular Weight (calculated)

20430.5 Da

IEP (calculated)

11.269

GRAVY (calculated)

-0.576

Length

179 amino acids

Sequence
(BLAST)

001: MAKTLSRSTA SRIANRFFST SKALAPSQSN LISRPSSPTL FHAVGFIPSS TTLDDILQTQ KIQSRVVHRS SERHSPRRSR SKFSYRPPTT EISPLPSGCD
101: YKHWLIVIDK PAGRIPGVIY VLPNSYVDPE YKDYGGELFL NGEVVPRPPE RQRRIVRFMT PILRYNDRTR NVRGRESML

Best Arabidopsis Sequence Match ( AT2G35240.1 )
(BLAST)

001: MAKTLSRSTA SCVAKRFFST SNAVASPSPL PSHLISRRFS PTIFHAVGYI PALTRFTTIR TRMDRSGGSY SPLKSGSNFS DRPPTEMAPL FPGCDYEHWL
101: IVMEKPGGEN AQKQQMIDCY VQTLAKIVGS EEEARKKIYN VSCERYFGFG CEIDEETSNK LEGLPGVLFV LPDSYVDPEF KDYGAELFVN GEVVPRPPER
201: QRRMVELTNQ RGSDKPKYHD RIRNVRRREN MR

Arabidopsis Description

MORF6MORF6 [Source:UniProtKB/TrEMBL;Acc:A0A178VRA7]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.