Factsheet for Zm00001d045528_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

extracellular: 20408568
mitochondrion: 27297264
mitochondrion: 29575040

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 29575040 doi

WQ Wang, Y Wang, Q Zhang, IM Møller, SQ Song

Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d013705_P001
Zm00001d013859_P002
Zm00001d017475_P002
Zm00001d030661_P001
Zm00001d032464_P008
Zm00001d033283_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32580.1	Zm00001d017475_P002	AT3G48150.1	21798944
AT2G35240.1	Zm00001d013705_P001	AT4G14740.1	21798944
AT2G35240.1	Zm00001d030661_P001	AT4G14740.1	21798944
AT2G35240.1	Zm00001d033283_P001	AT4G14740.1	21798944
AT2G35240.1	Zm00001d013859_P002	AT4G39050.1	21798944
AT2G35240.1	Zm00001d032464_P008	AT4G39050.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os06t0116600-01	Rice	mitochondrion	70.4	95.15
EER87743	Sorghum	mitochondrion	91.48	91.89
HORVU0Hr1G032330.2	Barley	cytosol	43.95	89.91
GSMUA_Achr6P01260_001	Banana	cytosol	58.3	88.44
GSMUA_Achr4P27580_001	Banana	cytosol	57.4	87.07
CDX79529	Canola	cytosol	45.29	83.47
TraesCS7D01G045100.1	Wheat	mitochondrion, plastid	85.65	82.33
TraesCS4A01G437100.1	Wheat	mitochondrion	85.65	81.28
TraesCS7A01G050200.1	Wheat	mitochondrion	85.2	80.51
HORVU7Hr1G008880.2	Barley	plastid	86.55	80.42
Zm00001d026243_P002	Maize	extracellular	77.13	79.26
TraesCS6D01G007100.1	Wheat	mitochondrion	79.37	73.44
CDY58181	Canola	cytosol	54.71	72.62
Bra017328.1-P	Field mustard	cytosol	59.19	70.97
HORVU6Hr1G002030.1	Barley	plastid	81.17	70.43
TraesCS6A01G005300.1	Wheat	plastid	78.92	70.4
TraesCS6B01G010000.1	Wheat	plastid	78.92	70.12
VIT_05s0049g01500.t01	Wine grape	plastid	71.3	68.24
PGSC0003DMT400038117	Potato	plastid	70.4	67.97
CDY17174	Canola	plastid	68.61	66.52
Bra005495.1-P	Field mustard	plastid	68.61	66.52
CDY37719	Canola	plastid	65.92	66.22
CDY23734	Canola	plastid	67.26	65.79
Bra021852.1-P	Field mustard	plastid	65.47	65.77
KRH31686	Soybean	mitochondrion	65.47	65.47
CDY19491	Canola	plastid	67.71	65.37
Solyc06g008220.2.1	Tomato	plastid	69.96	65.27
KRG92352	Soybean	mitochondrion, plastid	69.06	64.98
VIT_07s0005g03930.t01	Wine grape	mitochondrion, plastid	68.16	64.41
AT1G32580.1	Thale cress	mitochondrion, plastid	64.57	62.88
PGSC0003DMT400060429	Potato	plastid	65.92	62.82
Solyc05g054960.2.1	Tomato	plastid	65.47	62.39
Bra036402.1-P	Field mustard	mitochondrion, plastid	61.88	61.88
Bra005357.1-P	Field mustard	plastid	64.57	61.54
CDY31675	Canola	plastid	64.57	61.54
CDY65831	Canola	mitochondrion, plastid	60.99	60.99
CDX84224	Canola	mitochondrion, plastid	62.78	60.87
HORVU5Hr1G072150.9	Barley	mitochondrion	46.64	60.47
Bra017613.1-P	Field mustard	plastid	18.39	60.29
AT2G35240.1	Thale cress	mitochondrion, plastid	62.33	59.91
GSMUA_Achr2P17930_001	Banana	mitochondrion, plastid	69.51	59.85
KRH34443	Soybean	plastid	69.06	58.33
TraesCS3A01G476100.2	Wheat	plastid	41.26	51.69
CDX79597	Canola	plastid	53.81	51.5
Bra023005.1-P	Field mustard	endoplasmic reticulum	21.08	50.54
CDX84615	Canola	mitochondrion	34.53	43.02
HORVU2Hr1G040170.17	Barley	mitochondrion	45.29	37.0
Zm00001d026307_P001	Maize	mitochondrion	36.77	33.33
Zm00001d024674_P001	Maize	plastid	31.84	31.84
Zm00001d048291_P001	Maize	mitochondrion	35.87	19.51
Zm00001d049043_P001	Maize	mitochondrion	31.84	17.32

Protein Annotations

EMBL:BT062996	EMBL:EU966136	EnsemblPlants:Zm00001d045528_P001	EnsemblPlants:Zm00001d045528_T001	EnsemblPlantsGene:Zm00001d045528	EntrezGene:100283838
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016554	PANTHER:PTHR31346
PANTHER:PTHR31346:SF9	ProteinID:AQL02481.1	SEG:seg	UniParc:UPI000182E456	UniProt:B6TMC1	MapMan:16.12.5.1

Description

Multiple organellar RNA editing factor 2 chloroplastic

Coordinates

chr9:-:25547201..25549419

Molecular Weight (calculated)

24796.5 Da

IEP (calculated)

9.318

GRAVY (calculated)

-0.572

Length

223 amino acids

Sequence
(BLAST)

001: MAAAAARRLL SRRASSSSLS ALLRRGAVPE QSLVLRPAVV AAASRLGFQR GMARRPGGDG YVSTRSGAGG DRAPMATEMA PLFPGCDYEH WLIVMDKPGG
101: EGASKQQMID CYIQTLAKVL GSEEEAKKKI YNVSCERYFG FGCEIDEETS NKLEGLPGVL FVLPDSYVDA EYKDYGAELF VNGEIVQRTP ERQRRVEPVP
201: QRAADRPRYN DRTRYARRRE NQR

Best Arabidopsis Sequence Match ( AT1G32580.1 )
(BLAST)

001: MAKTLARSTA SRITKRLIST SGATTPSPSY ILSRRSTPVF SHAVGFISSL NRFTTIRTRM DRSGGSYSPL KSGSNFSDRA PTEMAPLFPG CDYEHWLIVM
101: DKPGGENATK QQMIDCYVQT LAKIIGSEEE AKKKIYNVSC ERYFGFGCEI DEETSNKLEG LPGVLFILPD SYVDQENKDY GAELFVNGEI VQRPPERQRK
201: IIELTTQRTN DKPKYHDKTR YVRRRENMR

Arabidopsis Description

MORF5Multiple organellar RNA editing factor 5, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9C7Y2]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.