Factsheet for PGSC0003DMT400038117

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001474
PGSC0003DMT400001475
PGSC0003DMT400001476
PGSC0003DMT400008772
PGSC0003DMT400015465
PGSC0003DMT400016521
PGSC0003DMT400047487
PGSC0003DMT400063189
PGSC0003DMT400069515

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32580.1	PGSC0003DMT400063189	AT3G48150.1	21798944
AT1G32580.1	PGSC0003DMT400001474	AT3G49580.1	21798944
AT1G32580.1	PGSC0003DMT400001475	AT3G49580.1	21798944
AT1G32580.1	PGSC0003DMT400001476	AT3G49580.1	21798944
AT1G32580.1	PGSC0003DMT400069515	AT3G49580.1	21798944
AT2G35240.1	PGSC0003DMT400001474	AT3G49580.1	21798944
AT2G35240.1	PGSC0003DMT400001475	AT3G49580.1	21798944
AT2G35240.1	PGSC0003DMT400001476	AT3G49580.1	21798944
AT2G35240.1	PGSC0003DMT400069515	AT3G49580.1	21798944
AT2G35240.1	PGSC0003DMT400016521	AT4G14740.1	21798944
AT2G35240.1	PGSC0003DMT400008772	AT4G39050.1	21798944
AT2G35240.1	PGSC0003DMT400015465	AT5G13810.1	21798944
AT2G35240.1	PGSC0003DMT400047487	AT5G13810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g008220.2.1	Tomato	plastid	95.24	92.05
Os06t0116600-01	Rice	mitochondrion	63.64	89.09
GSMUA_Achr4P27580_001	Banana	cytosol	55.84	87.76
GSMUA_Achr6P01260_001	Banana	cytosol	55.84	87.76
HORVU0Hr1G032330.2	Barley	cytosol	41.13	87.16
EES11377	Sorghum	mitochondrion, plastid	70.13	75.0
Zm00001d026243_P002	Maize	extracellular	69.7	74.19
TraesCS2D01G434600.1	Wheat	plastid	68.83	73.95
TraesCS2B01G457700.1	Wheat	plastid	68.4	73.83
TraesCS2A01G437600.1	Wheat	plastid	67.97	73.36
Zm00001d045528_P001	Maize	mitochondrion	67.97	70.4
VIT_07s0005g03930.t01	Wine grape	mitochondrion, plastid	70.56	69.07
KRH31686	Soybean	mitochondrion	66.67	69.06
EER87743	Sorghum	mitochondrion	66.23	68.92
KRG92352	Soybean	mitochondrion, plastid	70.56	68.78
TraesCS7D01G045100.1	Wheat	mitochondrion, plastid	68.83	68.53
TraesCS4A01G437100.1	Wheat	mitochondrion	69.26	68.09
TraesCS7A01G050200.1	Wheat	mitochondrion	68.83	67.37
HORVU7Hr1G008880.2	Barley	plastid	69.26	66.67
AT1G32580.1	Thale cress	mitochondrion, plastid	63.64	64.19
AT2G35240.1	Thale cress	mitochondrion, plastid	64.07	63.79
TraesCS6D01G007100.1	Wheat	mitochondrion	65.8	63.07
PGSC0003DMT400060429	Potato	plastid	63.64	62.82
KRH34443	Soybean	plastid	71.43	62.5
GSMUA_Achr2P17930_001	Banana	mitochondrion, plastid	69.7	62.16
HORVU5Hr1G072150.9	Barley	mitochondrion	45.02	60.47
TraesCS6A01G005300.1	Wheat	plastid	65.37	60.4
TraesCS6B01G010000.1	Wheat	plastid	65.37	60.16
HORVU6Hr1G002030.1	Barley	plastid	66.67	59.92
HORVU1Hr1G057120.1	Barley	plastid	33.33	50.33
TraesCS3A01G476100.2	Wheat	plastid	34.63	44.94
HORVU2Hr1G040170.17	Barley	mitochondrion	44.16	37.36
PGSC0003DMT400043314	Potato	mitochondrion, plastid	36.36	32.31
PGSC0003DMT400055883	Potato	plastid	30.3	30.97
PGSC0003DMT400039805	Potato	plastid	35.93	20.6
PGSC0003DMT400054809	Potato	mitochondrion	36.36	20.44
PGSC0003DMT400057561	Potato	mitochondrion, plastid	32.03	15.74

Protein Annotations

EnsemblPlants:PGSC0003DMT400038117	EnsemblPlantsGene:PGSC0003DMG400014699	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016554	PANTHER:PTHR31346	PANTHER:PTHR31346:SF9	PGSC:PGSC0003DMG400014699	SEG:seg	UniParc:UPI0002960C66
UniProt:M1B6C5	MapMan:16.12.5.1	:	:	:	:

Description

DAG protein, chloroplast [Source:PGSC_GENE;Acc:PGSC0003DMG400014699]

Coordinates

chr6:-:1807262..1810746

Molecular Weight (calculated)

25757.4 Da

IEP (calculated)

8.683

GRAVY (calculated)

-0.655

Length

231 amino acids

Sequence
(BLAST)

001: MAGSATPLQS TSVSLAAGEL SLSIAVLKPT NLAGRSSTFR RNSSLHSIRV GNTNSGRVNT IVCKANRSAY SPLNSGSNYG DRPPTEMAPL FPGCDYEHWL
101: IVMDKPGGEG ATKQQMIDCY IQTLAKVVGS EEEAKKKIYN VSCERYFGFG CEIDEETSNK LEGLPGVLFV LPDSYVDPEN KDYGAELFVN GEIVRRSPER
201: QRRVEPVPQR AQDRPRYNDR TRYVRRRENT R

Best Arabidopsis Sequence Match ( AT1G32580.1 )
(BLAST)

001: MAKTLARSTA SRITKRLIST SGATTPSPSY ILSRRSTPVF SHAVGFISSL NRFTTIRTRM DRSGGSYSPL KSGSNFSDRA PTEMAPLFPG CDYEHWLIVM
101: DKPGGENATK QQMIDCYVQT LAKIIGSEEE AKKKIYNVSC ERYFGFGCEI DEETSNKLEG LPGVLFILPD SYVDQENKDY GAELFVNGEI VQRPPERQRK
201: IIELTTQRTN DKPKYHDKTR YVRRRENMR

Arabidopsis Description

MORF5Multiple organellar RNA editing factor 5, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9C7Y2]
SUBAcon: [plastid,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.