Factsheet for TraesCS6A01G005300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G177600.1
TraesCS1B01G202600.1
TraesCS1D01G176100.1
TraesCS5A01G056700.2
TraesCS5A01G377600.1
TraesCS5B01G060100.2
TraesCS5B01G381200.1
TraesCS5D01G067900.2
TraesCS5D01G387600.1
TraesCS6A01G251400.1
TraesCS6B01G273900.1
TraesCS6D01G233200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32580.1	TraesCS6A01G251400.1	AT3G48150.1	21798944
AT1G32580.1	TraesCS6B01G273900.1	AT3G48150.1	21798944
AT1G32580.1	TraesCS6D01G233200.1	AT3G48150.1	21798944
AT2G35240.1	TraesCS5A01G056700.2	AT4G14740.1	21798944
AT2G35240.1	TraesCS5A01G377600.1	AT4G14740.1	21798944
AT2G35240.1	TraesCS5B01G060100.2	AT4G14740.1	21798944
AT2G35240.1	TraesCS5B01G381200.1	AT4G14740.1	21798944
AT2G35240.1	TraesCS5D01G067900.2	AT4G14740.1	21798944
AT2G35240.1	TraesCS5D01G387600.1	AT4G14740.1	21798944
AT2G35240.1	TraesCS1A01G177600.1	AT4G39050.1	21798944
AT2G35240.1	TraesCS1B01G202600.1	AT4G39050.1	21798944
AT2G35240.1	TraesCS1D01G176100.1	AT4G39050.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G032330.2	Barley	cytosol	42.0	96.33
Os06t0116600-01	Rice	mitochondrion	61.2	92.73
TraesCS6D01G007100.1	Wheat	mitochondrion	88.4	91.7
TraesCS6B01G010000.1	Wheat	plastid	91.6	91.24
HORVU6Hr1G002030.1	Barley	plastid	90.4	87.94
GSMUA_Achr6P01260_001	Banana	cytosol	50.0	85.03
GSMUA_Achr4P27580_001	Banana	cytosol	49.2	83.67
CDX79529	Canola	cytosol	40.0	82.64
TraesCS7A01G050200.1	Wheat	mitochondrion	78.0	82.63
TraesCS4A01G437100.1	Wheat	mitochondrion	77.2	82.13
EER87743	Sorghum	mitochondrion	70.8	79.73
Zm00001d045528_P001	Maize	mitochondrion	70.4	78.92
TraesCS2A01G437600.1	Wheat	plastid	64.8	75.7
CDY58181	Canola	cytosol	50.0	74.4
Bra017328.1-P	Field mustard	cytosol	53.6	72.04
CDY23734	Canola	plastid	60.0	65.79
VIT_05s0049g01500.t01	Wine grape	plastid	61.2	65.67
KRH31686	Soybean	mitochondrion	58.4	65.47
PGSC0003DMT400038117	Potato	plastid	60.4	65.37
Bra005495.1-P	Field mustard	plastid	60.0	65.22
CDY37719	Canola	plastid	57.6	64.86
Bra021852.1-P	Field mustard	plastid	57.6	64.86
Solyc06g008220.2.1	Tomato	plastid	61.6	64.44
VIT_07s0005g03930.t01	Wine grape	mitochondrion, plastid	60.8	64.41
CDY17174	Canola	plastid	59.2	64.35
CDY19491	Canola	plastid	58.8	63.64
KRG92352	Soybean	mitochondrion, plastid	60.0	63.29
CDX84224	Canola	mitochondrion, plastid	58.0	63.04
Bra017613.1-P	Field mustard	plastid	16.8	61.76
Bra005357.1-P	Field mustard	plastid	57.6	61.54
CDY31675	Canola	plastid	57.6	61.54
PGSC0003DMT400060429	Potato	plastid	57.6	61.54
Solyc05g054960.2.1	Tomato	plastid	57.6	61.54
AT1G32580.1	Thale cress	mitochondrion, plastid	56.0	61.14
GSMUA_Achr2P17930_001	Banana	mitochondrion, plastid	63.2	61.0
Bra036402.1-P	Field mustard	mitochondrion, plastid	54.0	60.54
CDY65831	Canola	mitochondrion, plastid	53.6	60.09
AT2G35240.1	Thale cress	mitochondrion, plastid	53.6	57.76
KRH34443	Soybean	plastid	60.4	57.2
TraesCS3A01G476100.2	Wheat	plastid	37.6	52.81
CDX79597	Canola	plastid	48.4	51.93
Bra023005.1-P	Field mustard	endoplasmic reticulum	18.4	49.46
CDX84615	Canola	mitochondrion	30.0	41.9
TraesCS6A01G314700.1	Wheat	mitochondrion	35.2	34.92
TraesCS7A01G307000.1	Wheat	plastid	28.8	31.72
TraesCS5A01G291000.1	Wheat	mitochondrion	31.2	19.6
TraesCS4A01G203900.1	Wheat	nucleus	31.6	19.08
TraesCS7A01G262500.1	Wheat	mitochondrion	31.6	18.99

Protein Annotations

EnsemblPlants:TraesCS6A01G005300.1

EnsemblPlantsGene:TraesCS6A01G005300

PANTHER:PTHR31346

PANTHER:PTHR31346:SF9

SEG:seg

MapMan:16.12.5.1

Description

No Description!

Coordinates

chr6A:+:1985153..1987638

Molecular Weight (calculated)

27127.2 Da

IEP (calculated)

9.559

GRAVY (calculated)

-0.556

Length

250 amino acids

Sequence
(BLAST)

001: MAAAAAAASM ARRLLSPTTS SPSTAIRLLI SRRIASAPSI PRAPAAAARE MLRPAAVASS SSFLLRGAGG ARGMARRPGG DGYSPARGGG GGGGGGDRAP
101: TEMAPLFPGC DYEHWLIVMD KPGGEGASKH QMIECYVQTL AKVLGSEEEA KRKIYNVSCE RYFGFGCEID EETSNKLEGI PGVLFVLPDS YVDPEHKDYG
201: AELFVNGEIV QRSPERQRRV EPVLQRASDR PRYNDRTRYA RRRENQQQQR

Best Arabidopsis Sequence Match ( AT1G32580.1 )
(BLAST)

001: MAKTLARSTA SRITKRLIST SGATTPSPSY ILSRRSTPVF SHAVGFISSL NRFTTIRTRM DRSGGSYSPL KSGSNFSDRA PTEMAPLFPG CDYEHWLIVM
101: DKPGGENATK QQMIDCYVQT LAKIIGSEEE AKKKIYNVSC ERYFGFGCEI DEETSNKLEG LPGVLFILPD SYVDQENKDY GAELFVNGEI VQRPPERQRK
201: IIELTTQRTN DKPKYHDKTR YVRRRENMR

Arabidopsis Description

MORF5Multiple organellar RNA editing factor 5, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9C7Y2]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.