Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 6
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G104800.2 | Wheat | mitochondrion | 94.2 | 93.75 |
| TraesCS4B01G107700.2 | Wheat | mitochondrion | 96.14 | 91.92 |
| HORVU4Hr1G016440.1 | Barley | mitochondrion, plastid | 92.27 | 88.84 |
| Zm00001d049043_P001 | Maize | mitochondrion | 73.43 | 74.15 |
| Os11t0216400-01 | Rice | mitochondrion | 65.22 | 72.19 |
| EES08356 | Sorghum | mitochondrion | 74.64 | 68.97 |
| GSMUA_Achr1P22060_001 | Banana | mitochondrion | 49.28 | 52.31 |
| VIT_12s0035g00240.t01 | Wine grape | mitochondrion | 40.58 | 41.69 |
| TraesCS7A01G307000.1 | Wheat | plastid | 22.46 | 40.97 |
| CDY50054 | Canola | mitochondrion | 33.09 | 36.05 |
| CDX78969 | Canola | mitochondrion | 33.33 | 36.03 |
| Bra013439.1-P | Field mustard | mitochondrion | 33.33 | 35.84 |
| CDX98651 | Canola | mitochondrion | 27.78 | 35.6 |
| Bra012522.1-P | Field mustard | mitochondrion, plastid | 32.61 | 34.79 |
| CDY01629 | Canola | mitochondrion | 32.61 | 34.35 |
| TraesCS4A01G437100.1 | Wheat | mitochondrion | 18.84 | 33.19 |
| TraesCS2A01G437600.1 | Wheat | plastid | 17.15 | 33.18 |
| Solyc02g079210.2.1 | Tomato | plastid | 36.47 | 32.83 |
| TraesCS7A01G050200.1 | Wheat | mitochondrion | 18.6 | 32.63 |
| PGSC0003DMT400057561 | Potato | mitochondrion, plastid | 36.47 | 32.13 |
| AT4G20020.1 | Thale cress | mitochondrion | 32.37 | 31.98 |
| KRH44085 | Soybean | mitochondrion, plastid | 35.27 | 31.6 |
| TraesCS6A01G005300.1 | Wheat | plastid | 19.08 | 31.6 |
| KRH26355 | Soybean | mitochondrion | 34.54 | 30.95 |
| TraesCS6A01G314700.1 | Wheat | mitochondrion | 17.87 | 29.37 |
| TraesCS3A01G476100.2 | Wheat | plastid | 11.59 | 26.97 |
| TraesCS5A01G291000.1 | Wheat | mitochondrion | 22.22 | 23.12 |
| TraesCS7A01G262500.1 | Wheat | mitochondrion | 21.74 | 21.63 |
| CDY60655 | Canola | plastid | 33.09 | 18.98 |
| AT5G44780.1 | Thale cress | mitochondrion | 33.09 | 18.95 |
| Bra025105.1-P | Field mustard | mitochondrion | 32.61 | 18.42 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G203900.1 | EnsemblPlantsGene:TraesCS4A01G203900 | PANTHER:PTHR31346 | PANTHER:PTHR31346:SF5 | SEG:seg | MapMan:16.12.5.1 |
Description
No Description!
Coordinates
chr4A:-:494640795..494643747
Molecular Weight (calculated)
44234.9 Da
IEP (calculated)
8.604
GRAVY (calculated)
-0.931
Length
414 amino acids
Sequence
(BLAST)
(BLAST)
001: MALALRLRRA LAAASTSASL LRPTASAAAS PHRPPLLAPF VAPLPLPRLF LPGGAAGFRS TAAAAARGNY GGGADDAKID PDEILFEGCD YNHWLITMEF
101: PNPKPSREEM IETYLQTLAK VVGSYEEAKK RMYALSTTTY VGFQAVMTEE MSEKFRGLPG VVFILPDSYL YPETKEYGGD KYENGVITPR PPPVQYSKLS
201: RNDRNRNYRG NYENSPPPQG NYQNSPPPHG NYQNRSPPQG NFQGSRPQQE VRGYAPQQNY TQAGQDGRGY GRNDSADRPG YNAPGGYQGR VNEAGQGFQD
301: PQERRSFSQG QEGDLRPGGP SAPGNYGQPP APGNYGQPPA PGNYGQPSAP GSYGKPFGPP AYGQPSGSRY AGGNQGGPGY GGDNRQGAAP AYGGDNLQGV
401: SDQYPSPGEG QQGN
101: PNPKPSREEM IETYLQTLAK VVGSYEEAKK RMYALSTTTY VGFQAVMTEE MSEKFRGLPG VVFILPDSYL YPETKEYGGD KYENGVITPR PPPVQYSKLS
201: RNDRNRNYRG NYENSPPPQG NYQNSPPPHG NYQNRSPPQG NFQGSRPQQE VRGYAPQQNY TQAGQDGRGY GRNDSADRPG YNAPGGYQGR VNEAGQGFQD
301: PQERRSFSQG QEGDLRPGGP SAPGNYGQPP APGNYGQPPA PGNYGQPSAP GSYGKPFGPP AYGQPSGSRY AGGNQGGPGY GGDNRQGAAP AYGGDNLQGV
401: SDQYPSPGEG QQGN
001: MAMISHRLRR ALLTATSYVN RSISSSITPA SDFPSVSAAV LKRSVIGRST EVATRAPARL FSTRQYKLYK EGDEITEDTV LFEGCDYNHW LITMDFSKEE
101: TPKSPEEMVA AYEETCAQGL GISVEEAKQR MYACSTTTYQ GFQAIMTEQE SEKFKDLPGV VFILPDSYID PQNKEYGGDK YENGVITHRP PPIQSGRARP
201: RPRFDRSGGG SGGPQNFQRN TQYGQQPPMQ GGGGSYGPQQ GYATPGQGQG TQAPPPFQGG YNQGPRSPPP PYQAGYNQGQ GSPVPPYQAG YNQVQGSPVP
301: PYQGTQSSYG QGGSGNYSQG PQGGYNQGGP RNYNPQGAGN FGPASGAGNL GPAPGAGNPG YGQGYSGPGQ EQNQTFPQAD QRNRDWNNNN PAGQPGSDQF
401: PQGRRY
101: TPKSPEEMVA AYEETCAQGL GISVEEAKQR MYACSTTTYQ GFQAIMTEQE SEKFKDLPGV VFILPDSYID PQNKEYGGDK YENGVITHRP PPIQSGRARP
201: RPRFDRSGGG SGGPQNFQRN TQYGQQPPMQ GGGGSYGPQQ GYATPGQGQG TQAPPPFQGG YNQGPRSPPP PYQAGYNQGQ GSPVPPYQAG YNQVQGSPVP
301: PYQGTQSSYG QGGSGNYSQG PQGGYNQGGP RNYNPQGAGN FGPASGAGNL GPAPGAGNPG YGQGYSGPGQ EQNQTFPQAD QRNRDWNNNN PAGQPGSDQF
401: PQGRRY
Arabidopsis Description
MORF1Multiple organellar RNA editing factor 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O49429]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.