Factsheet for PGSC0003DMT400015465

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001617
PGSC0003DMT400015805
PGSC0003DMT400015807
PGSC0003DMT400023896
PGSC0003DMT400026858
PGSC0003DMT400028106
PGSC0003DMT400033300
PGSC0003DMT400060963
PGSC0003DMT400064073
PGSC0003DMT400069203
PGSC0003DMT400076437
PGSC0003DMT400078241
PGSC0003DMT400078242
PGSC0003DMT400079246

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13810.1	PGSC0003DMT400023896	AT1G22920.1	21798944
AT5G13810.1	PGSC0003DMT400069203	AT1G22920.1	21798944
AT5G13810.1	PGSC0003DMT400026858	AT1G31240.1	21798944
AT5G13810.1	PGSC0003DMT400064073	AT1G58070.1	21798944
AT5G13810.1	PGSC0003DMT400015805	AT2G16880.1	21798944
AT5G13810.1	PGSC0003DMT400015807	AT2G16880.1	21798944
AT5G13810.1	PGSC0003DMT400060963	AT2G42260.1	21798944
AT5G13810.1	PGSC0003DMT400001617	AT3G47640.1	21798944
AT5G13810.1	PGSC0003DMT400076437	AT4G30930.1	21798944
AT5G13810.1	PGSC0003DMT400033300	AT5G10060.1	21798944
AT5G13810.1	PGSC0003DMT400028106	AT5G11520.1	21798944
AT5G13810.1	PGSC0003DMT400079246	AT5G30490.1	21798944
AT5G13810.1	PGSC0003DMT400078241	AT5G58530.1	21798944
AT5G13810.1	PGSC0003DMT400078242	AT5G58530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g005270.1.1	Tomato	cytosol	64.23	92.63
PGSC0003DMT400047487	Potato	cytosol	65.33	67.8
CDX78539	Canola	cytosol, plastid	48.91	51.15
Bra006216.1-P	Field mustard	plastid	48.91	50.76
VIT_13s0019g00340.t01	Wine grape	plastid	49.27	50.37
KRH62918	Soybean	cytosol, plastid	47.08	50.19
CDY67732	Canola	plastid	47.45	50.19
CDX70521	Canola	plastid	48.91	50.0
AT5G13810.1	Thale cress	plastid	49.63	49.63
Bra008801.1-P	Field mustard	plastid	48.18	49.44
CDY70634	Canola	plastid	47.81	49.06
KRH13399	Soybean	plastid	44.16	45.32
KRH20755	Soybean	plastid	44.53	45.02
PGSC0003DMT400078241	Potato	cytosol, plastid	31.75	36.25
PGSC0003DMT400078242	Potato	cytosol, plastid	32.12	34.65
PGSC0003DMT400054970	Potato	cytosol, mitochondrion	25.91	29.1
PGSC0003DMT400007648	Potato	cytosol	37.59	26.01
PGSC0003DMT400017853	Potato	cytosol	30.66	26.01
PGSC0003DMT400020985	Potato	cytosol, plastid	39.05	24.65
PGSC0003DMT400031889	Potato	plastid	26.28	23.0
PGSC0003DMT400056766	Potato	cytosol	31.02	21.41
PGSC0003DMT400005022	Potato	cytosol	26.64	19.89
PGSC0003DMT400031969	Potato	cytosol	28.1	19.69
PGSC0003DMT400003335	Potato	cytosol	29.93	19.57
PGSC0003DMT400023120	Potato	cytosol	28.47	19.5

Protein Annotations

Gene3D:3.40.30.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0015035
GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0055114	InterPro:Glutaredoxin	InterPro:IPR002109
UniProt:M1A630	PFAM:PF00462	EnsemblPlantsGene:PGSC0003DMG400006037	PGSC:PGSC0003DMG400006037	EnsemblPlants:PGSC0003DMT400015465	PFscan:PS51354
PANTHER:PTHR10168	PANTHER:PTHR10168:SF70	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	UniParc:UPI000296044F	SEG:seg

Description

Glutaredoxin family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400006037]

Coordinates

chr11:-:7948770..7950122

Molecular Weight (calculated)

31568.2 Da

IEP (calculated)

9.500

GRAVY (calculated)

-0.566

Length

274 amino acids

Sequence
(BLAST)

001: MDHHHHHHRE NEFEYQEIQK AKTSSKFNRS RTIHSPRNSI EFPEKPLYVY PSPHSIERNG SIKKLHCSPL GSMVGTSFKG KVKKLYSIFD SRKENHRSSI
101: PKPQTKHSKP LISNTLLLPG TEDRVVIYFT SIRGIRRTFE DCYTMKMILG SYRVKVDERD VSMHIAYRKE LQNVIGEKNN NNIVTLPQVF IKGKYIGGAE
201: LIKQLNEIGE LPKLLRGIPL RPIGYICEVC GDVRFLPCSN CDGSRKFFDE DEGQVRRCLI CNENGLIRCT LCCS

Best Arabidopsis Sequence Match ( AT5G13810.1 )
(BLAST)

001: MAGLEKNADF SGKTTKSATT TSFFNRSLTI HGRTVVDSGP KSHNLNPSLN RTTSITKFYT PVESMGTSLK GKVKNLCRLF ETSKPVKPAL AEIPQKQKSG
101: KSLLPESRIS PFSSLNNSVI RLPGTEDRIV VYFTSLRGIR RTYEDCYAVR MIFRGFRVWI DERDVSMDIA YRKELQIAMG EKSVSLPQVF IMGKYVGGAD
201: VIKSLFEIGE LAKILKEFPM RQPGFVCHCC GDIRFVPCSN CSGSKKLFDE DEDRVKRCPE CNENGLIRCP DCSS

Arabidopsis Description

AT5g13810/MAC12_24 [Source:UniProtKB/TrEMBL;Acc:Q9FFZ0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.