Factsheet for PGSC0003DMT400007648

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g039900.1.1	Tomato	cytosol, extracellular, nucleus	61.11	88.97
VIT_08s0007g05530.t01	Wine grape	cytosol	38.89	62.86
PGSC0003DMT400020985	Potato	cytosol, plastid	59.34	54.15
CDX76039	Canola	plastid	40.4	45.58
KRG95123	Soybean	plastid	48.74	45.52
CDY14762	Canola	cytosol, plastid	40.4	44.2
Bra016941.1-P	Field mustard	plastid	40.66	43.75
CDY06932	Canola	plastid	40.66	43.75
CDY30970	Canola	plastid	40.4	43.48
Bra007299.1-P	Field mustard	plastid	42.93	43.04
CDY06138	Canola	plastid	42.93	43.04
CDX72074	Canola	plastid	42.93	42.71
AT2G41330.1	Thale cress	plastid	43.18	42.54
PGSC0003DMT400047487	Potato	cytosol	27.78	41.67
AT3G57070.1	Thale cress	plastid	43.43	41.25
Bra014646.1-P	Field mustard	plastid	40.66	40.97
CDY22520	Canola	plastid	41.41	40.9
CDY35418	Canola	plastid	41.16	40.65
Bra000225.1-P	Field mustard	plastid	41.16	40.65
KRH66801	Soybean	plastid	37.37	39.47
PGSC0003DMT400078241	Potato	cytosol, plastid	23.74	39.17
PGSC0003DMT400078242	Potato	cytosol, plastid	24.24	37.8
PGSC0003DMT400015465	Potato	cytosol	26.01	37.59
PGSC0003DMT400017853	Potato	cytosol	28.54	34.98
PGSC0003DMT400031889	Potato	plastid	25.0	31.63
PGSC0003DMT400056766	Potato	cytosol	31.06	30.98
PGSC0003DMT400054970	Potato	cytosol, mitochondrion	18.18	29.51
PGSC0003DMT400003335	Potato	cytosol	29.55	27.92
PGSC0003DMT400023120	Potato	cytosol	25.51	25.25
PGSC0003DMT400005022	Potato	cytosol	21.21	22.89
PGSC0003DMT400031969	Potato	cytosol	19.7	19.95

Protein Annotations

EntrezGene:102605132	Gene3D:3.40.30.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005623	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987
GO:GO:0015035	GO:GO:0016020	GO:GO:0016021	GO:GO:0019725	GO:GO:0022900	GO:GO:0045454
GO:GO:0055114	InterPro:Glutaredoxin	InterPro:IPR002109	UniProt:M0ZTC2	PFAM:PF00462	EnsemblPlantsGene:PGSC0003DMG400002953
PGSC:PGSC0003DMG400002953	EnsemblPlants:PGSC0003DMT400007648	PFscan:PS51354	PANTHER:PTHR10168	PANTHER:PTHR10168:SF185	SUPFAM:SSF52833
TMHMM:TMhelix	InterPro:Thioredoxin-like_sf	UniParc:UPI000294D772	RefSeq:XP_006340090.2	SEG:seg	:

Description

Thioredoxin fold [Source:PGSC_GENE;Acc:PGSC0003DMG400002953]

Coordinates

chr4:+:25087921..25091723

Molecular Weight (calculated)

45063.6 Da

IEP (calculated)

6.446

GRAVY (calculated)

-0.316

Length

396 amino acids

Sequence
(BLAST)

001: MEGSYSSISY FPNEVFRAQV VGNHSFIFPI YINQLFSLPF YFTFLPYTML HFFLVYLHKD SIFLVFRLMG CSVSRSYHDF GTRNVSNSHS APVSTTLFLP
101: TPLIHHPPLC KGDTNHLVSL TSSTYGSLDH RVLDNPTTSE DDPLSPDATI NTWELMEGLD DIDFRMVSSP VYDIQKELVK SNEHPSTKPL WKHLSEESLL
201: AKMDPNVALS YRKALYSSKQ YKHDQDDSSS CLSSFSRNTD HIYLKGTEDK IVVYFTSLRG IRKTYEDCCS VRMIFKGVRV CVDERDISMD SSYRKELQDV
301: LQGKTLNLPR VFIRGKYIGG LEEIKQLHDT GELAKLLEGF AVMNDGFTCE SCGEVRFVPC PSCNGSQKLF EEEEGKSRRC PHCNENGLIR CPGCCP

Best Arabidopsis Sequence Match ( AT3G57070.1 )
(BLAST)

001: MGSSASKTAS SVSSASSSSA FSPPPTKFSS DSSSPAVQRA FSFPTPLVHH PPARKGDSHH LVSLTSTSYG SLLLLDLDGS KNSSSDQQTL PRISISGKNT
101: PDPVSPDSVI NTWELMDGLD DEFEFEIPKP GKRLNSDFCS KPDPNRNVSL NGSSLKLDES YEIVRIEEDD GDWVPLTYKP KQPLWKHLSE ESFLSDLDPS
201: IVSSYKKALS SKLLSNHSNT RNPHRPTKSL SCSPSSNPSI LISEEPKSVS SSQLISSPAK PRLPGTEDKI VLYFTTLRGI RKTYEDCCCV RAILRGVQVS
301: VDERDISMDS KYRKELQSVL GAAEKPVCLP QVFIRGTHIG GVEEIMQLND GGELAEMLKD FPACERLGTC RSCGDARFVP CTNCDGSTKV FEEQDERFKR
401: CPKCNENGLV RCRVCCL

Arabidopsis Description

Glutaredoxin family protein [Source:UniProtKB/TrEMBL;Acc:Q9M1J3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.