Factsheet for PGSC0003DMT400020985

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 3
plastid 4
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g079560.1.1	Tomato	plastid	97.47	97.47
VIT_08s0007g05530.t01	Wine grape	cytosol	37.79	66.94
PGSC0003DMT400007648	Potato	cytosol	54.15	59.34
KRG95123	Soybean	plastid	50.46	51.65
CDX76039	Canola	plastid	41.01	50.71
CDY30970	Canola	plastid	41.71	49.18
CDY14762	Canola	cytosol, plastid	40.09	48.07
Bra016941.1-P	Field mustard	plastid	40.32	47.55
CDY06932	Canola	plastid	40.32	47.55
Bra007299.1-P	Field mustard	plastid	42.4	46.58
CDY06138	Canola	plastid	42.4	46.58
CDX72074	Canola	plastid	42.63	46.48
AT3G57070.1	Thale cress	plastid	44.24	46.04
Bra014646.1-P	Field mustard	plastid	41.24	45.55
KRH66801	Soybean	plastid	38.94	45.07
AT2G41330.1	Thale cress	plastid	41.71	45.02
CDY22520	Canola	plastid	41.24	44.64
Bra000225.1-P	Field mustard	plastid	40.78	44.14
CDY35418	Canola	plastid	40.78	44.14
PGSC0003DMT400047487	Potato	cytosol	25.81	42.42
PGSC0003DMT400078242	Potato	cytosol, plastid	23.27	39.76
PGSC0003DMT400078241	Potato	cytosol, plastid	21.66	39.17
PGSC0003DMT400015465	Potato	cytosol	24.65	39.05
PGSC0003DMT400017853	Potato	cytosol	27.42	36.84
PGSC0003DMT400054970	Potato	cytosol, mitochondrion	17.74	31.56
PGSC0003DMT400031889	Potato	plastid	22.58	31.31
PGSC0003DMT400056766	Potato	cytosol	27.65	30.23
PGSC0003DMT400003335	Potato	cytosol	27.88	28.88
PGSC0003DMT400023120	Potato	cytosol	25.12	27.25
PGSC0003DMT400005022	Potato	cytosol	19.35	22.89
PGSC0003DMT400031969	Potato	cytosol	18.2	20.2

Protein Annotations

EntrezGene:102599169	Gene3D:3.40.30.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005623	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987
GO:GO:0015035	GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0055114	InterPro:Glutaredoxin
InterPro:IPR002109	UniProt:M1AEE6	PFAM:PF00462	EnsemblPlantsGene:PGSC0003DMG400008127	PGSC:PGSC0003DMG400008127	EnsemblPlants:PGSC0003DMT400020985
PFscan:PS51354	PANTHER:PTHR10168	PANTHER:PTHR10168:SF185	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	UniParc:UPI0002949740
RefSeq:XP_006351270.1	SEG:seg	:	:	:	:

Description

Thioredoxin fold [Source:PGSC_GENE;Acc:PGSC0003DMG400008127]

Coordinates

chr10:+:58261594..58263962

Molecular Weight (calculated)

48316.6 Da

IEP (calculated)

5.050

GRAVY (calculated)

-0.533

Length

434 amino acids

Sequence
(BLAST)

001: MGCSASRSYD FVTTDPQNPW NYSSSSHSQS PYSYSDSSST PVSRTLSLPT PLVHHPAMCK GDTNHLVSLT STTYGSLVLI DPQIPNPNPN PNFHDGNFKN
101: PTTQMTKSLN GTEPQDPLSP DSVINTWELM EGLDDFDFHM VQSKIESPRK VKSKSLDIHS ELDTSELEKT YEFVEHSDSK PLWKHLSEEQ LLAKMDPNVA
201: SSYRQALSSK RFVYKESEDC PKPEIVSSIE LESSNTSLLA ENDFHLKGKE DKIQPEIVST IELESSNASL LSSLLPNNDV HLKGTEDKIV LYFTSLRGIR
301: KTYEECCTVR TIFRGFRVCV DERDVSMDSS YRKELQSVLE GKVISLPQVF IGGKYIGGAE EIKQLHEAGE LAELVEGFAV KHSGFVCGSC GDARFVPCPN
401: CNGSRKVFEE EEGKLRRCPS CNENGLIRCT GCCP

Best Arabidopsis Sequence Match ( AT3G57070.1 )
(BLAST)

001: MGSSASKTAS SVSSASSSSA FSPPPTKFSS DSSSPAVQRA FSFPTPLVHH PPARKGDSHH LVSLTSTSYG SLLLLDLDGS KNSSSDQQTL PRISISGKNT
101: PDPVSPDSVI NTWELMDGLD DEFEFEIPKP GKRLNSDFCS KPDPNRNVSL NGSSLKLDES YEIVRIEEDD GDWVPLTYKP KQPLWKHLSE ESFLSDLDPS
201: IVSSYKKALS SKLLSNHSNT RNPHRPTKSL SCSPSSNPSI LISEEPKSVS SSQLISSPAK PRLPGTEDKI VLYFTTLRGI RKTYEDCCCV RAILRGVQVS
301: VDERDISMDS KYRKELQSVL GAAEKPVCLP QVFIRGTHIG GVEEIMQLND GGELAEMLKD FPACERLGTC RSCGDARFVP CTNCDGSTKV FEEQDERFKR
401: CPKCNENGLV RCRVCCL

Arabidopsis Description

Glutaredoxin family protein [Source:UniProtKB/TrEMBL;Acc:Q9M1J3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.