Factsheet for PGSC0003DMT400078242

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
mitochondrion 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400029374
PGSC0003DMT400035458

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58530.1	PGSC0003DMT400029374	AT1G30860.1	21798944
AT5G58530.1	PGSC0003DMT400035458	AT1G30860.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g082180.1.1	Tomato	cytosol, plastid	98.43	98.43
PGSC0003DMT400078241	Potato	cytosol, plastid	75.59	80.0
VIT_06s0004g07040.t01	Wine grape	cytosol, mitochondrion	58.66	60.57
KRH30192	Soybean	plastid	49.61	54.55
Bra002640.1-P	Field mustard	cytosol	24.8	53.39
KRG98239	Soybean	plastid	49.21	52.97
CDY59509	Canola	cytosol, plastid	49.21	49.6
Bra020363.1-P	Field mustard	cytosol, plastid	48.82	49.21
CDY32696	Canola	cytosol, plastid	48.43	49.0
CDY32794	Canola	peroxisome	49.61	48.65
KRH72724	Soybean	plastid	53.54	48.4
Zm00001d012471_P001	Maize	cytosol, plastid	21.65	47.83
AT5G58530.1	Thale cress	cytosol, plastid	50.79	47.25
GSMUA_Achr5P29410_001	Banana	mitochondrion	42.91	47.19
GSMUA_Achr6P23380_001	Banana	mitochondrion	43.31	46.81
GSMUA_Achr6P32840_001	Banana	cytosol	42.13	45.92
GSMUA_Achr4P18760_001	Banana	plastid	42.52	45.76
KRH17081	Soybean	plastid	53.54	45.03
VIT_13s0067g01650.t01	Wine grape	plastid	50.79	43.88
GSMUA_Achr5P14280_001	Banana	plastid	38.98	43.23
TraesCS3B01G381400.1	Wheat	mitochondrion, plastid	41.34	42.17
HORVU3Hr1G087930.1	Barley	plastid	40.94	41.94
TraesCS3A01G349200.1	Wheat	plastid	40.94	41.94
TraesCS3D01G343100.1	Wheat	plastid	40.94	41.43
Os01t0829400-01	Rice	mitochondrion	41.34	41.18
GSMUA_Achr7P18270_001	Banana	mitochondrion	42.13	41.15
EES18035	Sorghum	mitochondrion	38.58	40.83
Zm00001d010594_P001	Maize	plastid	39.37	40.16
KXG33640	Sorghum	mitochondrion	40.94	39.25
EES19677	Sorghum	plastid	40.55	39.02
Os05t0471350-00	Rice	mitochondrion, plastid	39.37	38.91
TraesCS1A01G222600.1	Wheat	mitochondrion	35.04	38.53
HORVU1Hr1G060210.1	Barley	mitochondrion, plastid	36.22	38.17
Zm00001d038018_P001	Maize	mitochondrion	35.83	38.08
TraesCS1D01G224200.1	Wheat	mitochondrion	33.86	37.23
TraesCS1B01G235900.1	Wheat	mitochondrion	33.86	37.23
Zm00001d010509_P001	Maize	mitochondrion	35.83	36.84
Zm00001d043006_P001	Maize	plastid	40.94	35.99
PGSC0003DMT400047487	Potato	cytosol	37.4	35.98
Zm00001d038445_P001	Maize	cytosol	38.19	35.02
Os10t0343900-01	Rice	cytosol	18.11	34.85
HORVU1Hr1G070570.1	Barley	plastid	35.43	34.48
OQU81447	Sorghum	plastid	25.2	33.86
TraesCS1B01G305600.1	Wheat	mitochondrion, plastid	32.28	32.67
TraesCS1D01G294800.1	Wheat	plastid	32.28	32.67
TraesCS1A01G296500.1	Wheat	mitochondrion	32.28	32.41
PGSC0003DMT400015465	Potato	cytosol	34.65	32.12
HORVU7Hr1G076170.1	Barley	plastid	26.38	30.18
PGSC0003DMT400054970	Potato	cytosol, mitochondrion	28.35	29.51
Os05t0353600-00	Rice	plastid	36.61	27.76
PGSC0003DMT400031889	Potato	plastid	29.92	24.28
PGSC0003DMT400007648	Potato	cytosol	37.8	24.24
PGSC0003DMT400017853	Potato	cytosol	30.71	24.15
PGSC0003DMT400020985	Potato	cytosol, plastid	39.76	23.27
PGSC0003DMT400056766	Potato	cytosol	35.04	22.42
PGSC0003DMT400005022	Potato	cytosol	32.28	22.34
PGSC0003DMT400003335	Potato	cytosol	35.43	21.48
PGSC0003DMT400031969	Potato	cytosol	29.53	19.18
PGSC0003DMT400023120	Potato	cytosol	29.13	18.5

Protein Annotations

EntrezGene:102595004	Gene3D:3.40.30.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005623	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987
GO:GO:0015035	GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0055114	InterPro:Glutaredoxin
InterPro:IPR002109	UniProt:M1CZQ1	PFAM:PF00462	EnsemblPlantsGene:PGSC0003DMG400030449	PGSC:PGSC0003DMG400030449	EnsemblPlants:PGSC0003DMT400078242
PFscan:PS51354	PANTHER:PTHR10168	PANTHER:PTHR10168:SF182	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	UniParc:UPI000295165A
RefSeq:XP_006350855.1	SEG:seg	:	:	:	:

Description

Glutaredoxin family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400030449]

Coordinates

chr6:-:57371491..57372841

Molecular Weight (calculated)

28649.6 Da

IEP (calculated)

9.167

GRAVY (calculated)

-0.400

Length

254 amino acids

Sequence
(BLAST)

001: MLVTRTKSKI WNHNTNSPKF SCPSFKDIQT LFSDDSNCNS PTPNKKPNIF HRVRRVSAVL RALSVRPGPD LPLKTLLPQP ESNLKETRKS EPLIQIPGAE
101: KKIVIYFTSL RVIRSTFDDC KAVRTILRSF RVSIDERDVS MDSGFMEELK TILGIREKTK PSLPRVFIGG RYIGGAEEIR QLHEAGELKK YVEGLIPADL
201: STCEVCGGHR FILCDECNGS HKYYSEKGGF RTCTSCNENG LIRCPSCYYA PITL

Best Arabidopsis Sequence Match ( AT5G58530.1 )
(BLAST)

001: MWRPWRKSSV KIHDTYSPTT ASFKDIHHLC SDDSPSFPSS PSPSPKTASR VFHRVRAANL ILKSWPTRQS NHLLRADSEP INLSRNQNPE SDSKQSKTKT
101: EPDVRISIPG AEKSIVVYFT SLRVVRPTFE ACKSVTSILH SFPVRIDERD LSMDASFSTE LQRIFGKDQN QNQNQAKTPK LPRVFIGGRY IGGAEEVKQL
201: HEIGELKKLV QELPKIEPGV CEMCGGHRFV PCKDCHGSHK VHTEKLGFRT CLTCNENGLV RCSSCSFPQS PPP

Arabidopsis Description

At5g58530 [Source:UniProtKB/TrEMBL;Acc:Q9FGG8]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.