Factsheet for TraesCS1A01G222600.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G229600.2
TraesCS2B01G251300.1
TraesCS2D01G233500.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58530.1	TraesCS2A01G229600.2	AT1G30860.1	21798944
AT5G58530.1	TraesCS2B01G251300.1	AT1G30860.1	21798944
AT5G58530.1	TraesCS2D01G233500.1	AT1G30860.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G224200.1	Wheat	mitochondrion	97.4	97.4
TraesCS1B01G235900.1	Wheat	mitochondrion	97.4	97.4
HORVU1Hr1G060210.1	Barley	mitochondrion, plastid	91.34	87.55
EES18035	Sorghum	mitochondrion	74.89	72.08
Zm00001d010509_P001	Maize	mitochondrion	74.03	69.23
Zm00001d038018_P001	Maize	mitochondrion	71.43	69.04
Os05t0353600-00	Rice	plastid	76.19	52.54
GSMUA_Achr6P32840_001	Banana	cytosol	48.92	48.5
GSMUA_Achr5P29410_001	Banana	mitochondrion	46.75	46.75
GSMUA_Achr4P18760_001	Banana	plastid	47.19	46.19
GSMUA_Achr5P14280_001	Banana	plastid	45.02	45.41
TraesCS3A01G349200.1	Wheat	plastid	47.19	43.95
TraesCS2A01G128800.1	Wheat	cytosol	37.66	42.86
GSMUA_Achr7P18270_001	Banana	mitochondrion	47.62	42.31
TraesCS4A01G148500.1	Wheat	cytosol	36.8	41.67
Bra002640.1-P	Field mustard	cytosol	21.21	41.53
CDX74801	Canola	cytosol	29.87	41.32
KRH14919	Soybean	plastid	42.86	40.91
GSMUA_Achr6P23380_001	Banana	mitochondrion	40.69	40.0
KRH31178	Soybean	plastid	38.53	38.86
KRH30192	Soybean	plastid	38.53	38.53
VIT_06s0004g07040.t01	Wine grape	cytosol, mitochondrion	39.83	37.4
KRG97693	Soybean	plastid	36.8	37.12
Bra020363.1-P	Field mustard	cytosol, plastid	39.83	36.51
KRG98239	Soybean	plastid	37.23	36.44
CDY32696	Canola	cytosol, plastid	39.39	36.26
PGSC0003DMT400078241	Potato	cytosol, plastid	37.66	36.25
CDY59509	Canola	cytosol, plastid	38.96	35.71
CDY32794	Canola	peroxisome	39.83	35.52
Solyc06g082180.1.1	Tomato	cytosol, plastid	38.96	35.43
PGSC0003DMT400078242	Potato	cytosol, plastid	38.53	35.04
KRH72724	Soybean	plastid	42.42	34.88
AT5G58530.1	Thale cress	cytosol, plastid	40.69	34.43
TraesCS1A01G296500.1	Wheat	mitochondrion	37.66	34.39
KRH73271	Soybean	plastid	42.86	32.89
CDY18861	Canola	mitochondrion	34.2	32.11
CDX74802	Canola	cytosol, mitochondrion	34.2	31.98
Bra004972.1-P	Field mustard	mitochondrion	34.2	31.98
VIT_13s0067g01650.t01	Wine grape	plastid	40.69	31.97
KRH17081	Soybean	plastid	41.56	31.79
Bra004971.1-P	Field mustard	plastid	32.9	30.04
TraesCS2A01G249000.1	Wheat	mitochondrion	29.0	24.81
TraesCS1A01G103100.1	Wheat	cytosol	31.6	24.01
TraesCS5A01G372200.1	Wheat	mitochondrion	33.77	23.71
TraesCS4A01G016500.1	Wheat	mitochondrion	31.6	22.12
TraesCS6A01G305800.1	Wheat	mitochondrion	34.2	20.52
Solyc06g082170.2.1	Tomato	cytosol, plastid	36.8	20.48
TraesCS3A01G340600.1	Wheat	plastid	33.77	19.02
TraesCS7A01G185200.1	Wheat	mitochondrion, plastid	33.77	17.14
TraesCS2A01G521700.1	Wheat	plastid	33.77	17.03
TraesCS3A01G158800.1	Wheat	cytosol	27.71	15.8
TraesCS2A01G295000.1	Wheat	mitochondrion	28.57	15.57

Protein Annotations

Gene3D:3.40.30.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0009055
GO:GO:0009987	GO:GO:0015035	GO:GO:0019725	GO:GO:0045454	InterPro:Glutaredoxin	InterPro:IPR002109
PFAM:PF00462	PFscan:PS51354	PANTHER:PTHR10168	PANTHER:PTHR10168:SF78	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf
EnsemblPlantsGene:TraesCS1A01G222600	EnsemblPlants:TraesCS1A01G222600.1	TIGR:cd03031	SEG:seg	:	:

Description

No Description!

Coordinates

chr1A:+:392481479..392482174

Molecular Weight (calculated)

24602.5 Da

IEP (calculated)

10.286

GRAVY (calculated)

-0.156

Length

231 amino acids

Sequence
(BLAST)

001: MWSSWSRRKP AAGRLTHSPS LSSSATSPSK EHSGIGSVLD DAAAPPAGGG KIVLHRVRSS TKLRTCKSFA AAEEAAAAAV AAERRVVLYF TSLRAVRPTF
101: EACRDVRAIL RGLRVGVDER DVSMDAAFLT ELRALMRRDQ PPLPQLFVAG RLVGDADDVR ALHESGELRR VVAGAPQLPP TPCASCGGSR FAPCVACGGS
201: HRWFSEKTRG FRVCAACNEN GLVRCTACSR G

Best Arabidopsis Sequence Match ( AT5G58530.1 )
(BLAST)

001: MWRPWRKSSV KIHDTYSPTT ASFKDIHHLC SDDSPSFPSS PSPSPKTASR VFHRVRAANL ILKSWPTRQS NHLLRADSEP INLSRNQNPE SDSKQSKTKT
101: EPDVRISIPG AEKSIVVYFT SLRVVRPTFE ACKSVTSILH SFPVRIDERD LSMDASFSTE LQRIFGKDQN QNQNQAKTPK LPRVFIGGRY IGGAEEVKQL
201: HEIGELKKLV QELPKIEPGV CEMCGGHRFV PCKDCHGSHK VHTEKLGFRT CLTCNENGLV RCSSCSFPQS PPP

Arabidopsis Description

At5g58530 [Source:UniProtKB/TrEMBL;Acc:Q9FGG8]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.