Factsheet for Solyc06g082170.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

plastid 4
mitochondrion 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g082100.2.1
Solyc10g005220.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58530.1	Solyc02g082100.2.1	AT1G30860.1	21798944
AT5G58530.1	Solyc10g005220.2.1	AT1G30860.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400078241	Potato	cytosol, plastid	54.22	93.75
Solyc06g082180.1.1	Tomato	cytosol, plastid	43.61	71.26
VIT_06s0004g07040.t01	Wine grape	cytosol, mitochondrion	33.98	57.32
KRH30192	Soybean	plastid	29.4	52.81
Bra002640.1-P	Field mustard	cytosol	14.94	52.54
KRG98239	Soybean	plastid	28.67	50.42
CDY59509	Canola	cytosol, plastid	29.16	48.02
CDY32696	Canola	cytosol, plastid	28.67	47.41
Bra020363.1-P	Field mustard	cytosol, plastid	28.67	47.22
CDY32794	Canola	peroxisome	28.67	45.95
GSMUA_Achr6P32840_001	Banana	cytosol	25.3	45.06
AT5G58530.1	Thale cress	cytosol, plastid	29.64	45.05
GSMUA_Achr6P23380_001	Banana	mitochondrion	25.3	44.68
Zm00001d012471_P001	Maize	cytosol, plastid	12.29	44.35
VIT_13s0067g01650.t01	Wine grape	plastid	30.6	43.2
KRH72724	Soybean	plastid	29.16	43.06
GSMUA_Achr5P29410_001	Banana	mitochondrion	23.61	42.42
GSMUA_Achr4P18760_001	Banana	plastid	23.37	41.1
Solyc11g005270.1.1	Tomato	cytosol	18.8	41.05
KRH17081	Soybean	plastid	29.64	40.73
GSMUA_Achr5P14280_001	Banana	plastid	22.41	40.61
GSMUA_Achr7P18270_001	Banana	mitochondrion	25.06	40.0
HORVU3Hr1G087930.1	Barley	plastid	23.61	39.52
TraesCS3B01G381400.1	Wheat	mitochondrion, plastid	23.61	39.36
TraesCS3A01G349200.1	Wheat	plastid	23.37	39.11
TraesCS3D01G343100.1	Wheat	plastid	23.37	38.65
Os01t0829400-01	Rice	mitochondrion	23.13	37.65
EES18035	Sorghum	mitochondrion	21.69	37.5
TraesCS1A01G222600.1	Wheat	mitochondrion	20.48	36.8
KXG33640	Sorghum	mitochondrion	23.37	36.6
Zm00001d010594_P001	Maize	plastid	21.93	36.55
HORVU1Hr1G060210.1	Barley	mitochondrion, plastid	21.2	36.51
Zm00001d038018_P001	Maize	mitochondrion	20.72	35.98
TraesCS1D01G224200.1	Wheat	mitochondrion	20.0	35.93
TraesCS1B01G235900.1	Wheat	mitochondrion	20.0	35.93
EES19677	Sorghum	plastid	22.65	35.61
Os10t0343900-01	Rice	cytosol	11.08	34.85
Zm00001d010509_P001	Maize	mitochondrion	20.24	34.01
Zm00001d043006_P001	Maize	plastid	23.61	33.91
Os05t0471350-00	Rice	mitochondrion, plastid	20.96	33.85
Solyc03g078380.1.1	Tomato	cytosol	21.2	33.72
HORVU1Hr1G070570.1	Barley	plastid	20.24	32.18
TraesCS1B01G305600.1	Wheat	mitochondrion, plastid	18.8	31.08
Zm00001d038445_P001	Maize	cytosol	20.72	31.05
TraesCS1D01G294800.1	Wheat	plastid	18.55	30.68
TraesCS1A01G296500.1	Wheat	mitochondrion	18.55	30.43
OQU81447	Sorghum	plastid	13.01	28.57
HORVU7Hr1G076170.1	Barley	plastid	15.18	28.38
Os05t0353600-00	Rice	plastid	20.96	25.97
Solyc04g039900.1.1	Tomato	cytosol, extracellular, nucleus	15.18	23.16
Solyc02g067400.1.1	Tomato	cytosol	14.94	21.83
Solyc08g083270.1.1	Tomato	cytosol	17.11	21.71
Solyc10g079560.1.1	Tomato	plastid	21.93	20.97
Solyc02g087850.1.1	Tomato	cytosol, plastid	20.0	19.81
Solyc11g006430.1.1	Tomato	cytosol	16.63	19.11
Solyc08g082590.2.1	Tomato	cytosol	16.63	17.56
Solyc09g009860.1.1	Tomato	cytosol	16.39	17.04

Protein Annotations

Gene3D:3.30.420.10	Gene3D:3.40.30.10	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004518	GO:GO:0004523	GO:GO:0005488	GO:GO:0005575	GO:GO:0005623
GO:GO:0006091	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987
GO:GO:0015035	GO:GO:0016787	GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0055114
GO:GO:0090502	InterPro:Glutaredoxin	InterPro:IPR002109	InterPro:IPR002156	InterPro:IPR036397	UniProt:K4CA76
PFAM:PF00462	PFAM:PF13456	PFscan:PS50879	PFscan:PS51354	PANTHER:PTHR10168	PANTHER:PTHR10168:SF182
InterPro:RNaseH-like_sf	InterPro:RNaseH_domain	InterPro:RNaseH_sf	SUPFAM:SSF52833	SUPFAM:SSF53098	EnsemblPlantsGene:Solyc06g082170.2
EnsemblPlants:Solyc06g082170.2.1	InterPro:Thioredoxin-like_sf	UniParc:UPI00027655A1	SEG:seg	:	:

Description

No Description!

Coordinates

chr6:-:48078993..48084262

Molecular Weight (calculated)

46092.6 Da

IEP (calculated)

8.841

GRAVY (calculated)

-0.184

Length

415 amino acids

Sequence
(BLAST)

001: MLLSRTKSKI WIHNNDSPSF SCSSFKDINT LFSDDSDYNS PVSTTKKSNI FHRVLRVNAV LRAFSTRPAP EPEPESTTPK SIQIPAAEKK IVIYFTSLRV
101: IRSTFDDCKA VRSILSSFRV SVDERDVSMD AGFMEELKTI LGTRVKTKLT LPRVFIGGSY VGGATEIIQL HEAGELKKYV EGLTPAEFST CQVCGGNRFV
201: LCEECSGSQK CYSEKSGFRT CTVCNENGLI SWAFPPEGCI KINTDGSFMP DSGLAGFGGV ARDDLGRWLG GFYGRLGMRV TSSLTAELWA IHGGLILAKK
301: YNLKKVIIET DSSEALKWIC RMGNVSKVHP EKNVVIEECK SLISELGIVL IRTLRQGNNC ADHLAKLRRI QQEDMVIIDR PPHSVQLLLR ADMNHVAYPR
401: YPKHGSSSCK SFVKI

Best Arabidopsis Sequence Match ( AT5G58530.1 )
(BLAST)

001: MWRPWRKSSV KIHDTYSPTT ASFKDIHHLC SDDSPSFPSS PSPSPKTASR VFHRVRAANL ILKSWPTRQS NHLLRADSEP INLSRNQNPE SDSKQSKTKT
101: EPDVRISIPG AEKSIVVYFT SLRVVRPTFE ACKSVTSILH SFPVRIDERD LSMDASFSTE LQRIFGKDQN QNQNQAKTPK LPRVFIGGRY IGGAEEVKQL
201: HEIGELKKLV QELPKIEPGV CEMCGGHRFV PCKDCHGSHK VHTEKLGFRT CLTCNENGLV RCSSCSFPQS PPP

Arabidopsis Description

At5g58530 [Source:UniProtKB/TrEMBL;Acc:Q9FGG8]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.