Factsheet for GSMUA_Achr6P32840_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
mitochondrion 2
cytosol 3
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P33210_001
GSMUA_Achr7P00390_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58530.1	GSMUA_Achr4P33210_001	AT1G30860.1	21798944
AT5G58530.1	GSMUA_Achr7P00390_001	AT1G30860.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d012471_P001	Maize	cytosol, plastid	27.47	55.65
GSMUA_Achr6P23380_001	Banana	mitochondrion	55.79	55.32
GSMUA_Achr5P29410_001	Banana	mitochondrion	52.36	52.81
GSMUA_Achr5P14280_001	Banana	plastid	51.07	51.97
GSMUA_Achr7P18270_001	Banana	mitochondrion	57.94	51.92
Bra002640.1-P	Field mustard	cytosol	24.89	49.15
GSMUA_Achr4P18760_001	Banana	plastid	49.79	49.15
Zm00001d010594_P001	Maize	plastid	52.36	49.0
TraesCS1A01G222600.1	Wheat	mitochondrion	48.5	48.92
TraesCS1B01G235900.1	Wheat	mitochondrion	48.5	48.92
TraesCS1D01G224200.1	Wheat	mitochondrion	47.21	47.62
VIT_06s0004g07040.t01	Wine grape	cytosol, mitochondrion	50.21	47.56
HORVU1Hr1G060210.1	Barley	mitochondrion, plastid	48.93	47.3
TraesCS3A01G349200.1	Wheat	plastid	50.21	47.18
Os01t0829400-01	Rice	mitochondrion	51.5	47.06
TraesCS3D01G343100.1	Wheat	plastid	50.64	47.01
TraesCS3B01G381400.1	Wheat	mitochondrion, plastid	50.21	46.99
EES19677	Sorghum	plastid	52.36	46.21
KXG33640	Sorghum	mitochondrion	52.36	46.04
HORVU3Hr1G087930.1	Barley	plastid	48.07	45.16
EES18035	Sorghum	mitochondrion	46.35	45.0
Os05t0471350-00	Rice	mitochondrion, plastid	49.36	44.75
PGSC0003DMT400078241	Potato	cytosol, plastid	45.92	44.58
KRH14919	Soybean	plastid	45.49	43.8
KRH30192	Soybean	plastid	43.35	43.72
Bra020363.1-P	Field mustard	cytosol, plastid	46.78	43.25
GSMUA_Achr8P22080_001	Banana	cytosol	36.48	43.15
CDX74801	Canola	cytosol	30.9	43.11
CDY32696	Canola	cytosol, plastid	46.35	43.03
Zm00001d010509_P001	Maize	mitochondrion	45.49	42.91
Solyc06g082180.1.1	Tomato	cytosol, plastid	46.35	42.52
Os10t0343900-01	Rice	cytosol	24.03	42.42
Zm00001d038018_P001	Maize	mitochondrion	43.35	42.26
PGSC0003DMT400078242	Potato	cytosol, plastid	45.92	42.13
CDY59509	Canola	cytosol, plastid	45.49	42.06
KRG98239	Soybean	plastid	42.06	41.53
Zm00001d043006_P001	Maize	plastid	51.5	41.52
KRH31178	Soybean	plastid	40.77	41.48
Zm00001d038445_P001	Maize	cytosol	48.5	40.79
KRG97693	Soybean	plastid	39.48	40.17
GSMUA_Achr8P09670_001	Banana	cytosol	34.76	39.51
TraesCS1B01G305600.1	Wheat	mitochondrion, plastid	42.06	39.04
CDY32794	Canola	peroxisome	43.35	39.0
KRH72724	Soybean	plastid	46.78	38.79
VIT_13s0067g01650.t01	Wine grape	plastid	48.93	38.78
HORVU1Hr1G070570.1	Barley	plastid	43.35	38.7
TraesCS1D01G294800.1	Wheat	plastid	41.2	38.25
AT5G58530.1	Thale cress	cytosol, plastid	44.64	38.1
TraesCS1A01G296500.1	Wheat	mitochondrion	40.77	37.55
KRH17081	Soybean	plastid	46.78	36.09
OQU81447	Sorghum	plastid	29.18	35.98
KRH73271	Soybean	plastid	45.49	35.22
HORVU7Hr1G076170.1	Barley	plastid	33.48	35.14
CDY18861	Canola	mitochondrion	36.91	34.96
Os05t0353600-00	Rice	plastid	48.93	34.03
Bra004972.1-P	Field mustard	mitochondrion	35.62	33.6
CDX74802	Canola	cytosol, mitochondrion	35.19	33.2
Bra004971.1-P	Field mustard	plastid	35.19	32.41
Solyc06g082170.2.1	Tomato	cytosol, plastid	45.06	25.3
GSMUA_Achr8P24180_001	Banana	cytosol	37.77	25.21
GSMUA_Achr2P20360_001	Banana	cytosol	28.76	24.36
GSMUA_Achr3P01620_001	Banana	mitochondrion	36.05	23.8
GSMUA_Achr6P03120_001	Banana	cytosol, mitochondrion	30.04	23.41
GSMUA_Achr4P00540_001	Banana	mitochondrion	37.34	22.14
GSMUA_Achr6P13210_001	Banana	cytosol	26.18	22.1
GSMUA_Achr10P...	Banana	cytosol	31.33	19.62
GSMUA_Achr7P20960_001	Banana	mitochondrion, nucleus	30.9	17.82
GSMUA_Achr6P18300_001	Banana	cytosol	28.76	17.18
GSMUA_Achr9P02540_001	Banana	cytosol	28.33	16.84

Protein Annotations

Gene3D:3.40.30.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0015035
GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr6G32840_001	EnsemblPlants:GSMUA_Achr6P32840_001
EnsemblPlants:GSMUA_Achr6T32840_001	InterPro:Glutaredoxin	InterPro:Glutaredoxin_subgr	InterPro:IPR002109	UniProt:M0TC78	PFAM:PF00462
PRINTS:PR00160	PFscan:PS51354	PANTHER:PTHR10168	PANTHER:PTHR10168:SF182	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf
UniParc:UPI000294F1BC	SEG:seg	:	:	:	:

Description

Putative Uncharacterized protein At5g39865 [Source:GMGC_GENE;Acc:GSMUA_Achr6G32840_001]

Coordinates

chr6:+:32070344..32071045

Molecular Weight (calculated)

25243.5 Da

IEP (calculated)

10.598

GRAVY (calculated)

-0.259

Length

233 amino acids

Sequence
(BLAST)

001: MWTSWEKIKV PRGATAIASP RLPNPKPSSL KDVRGPLDEP SSPSIARRLS PKAVLHSVRS ASSVLRSWRS SPPSPCAEKR IVLYFTSLRV VRKTFEDCRF
101: VRSILRGHRV AVDERDVSLD AGFLGELGRI VGRRRGVTTL PQVFIGGRHV GGADEIRQLH ETGELRRYVE GVAPVPAGSC DGCGGVRFVI CATCGGSHKC
201: YSHKGGGGVF RSCPACNENG LVRCPQCRTS PAI

Best Arabidopsis Sequence Match ( AT5G58530.1 )
(BLAST)

001: MWRPWRKSSV KIHDTYSPTT ASFKDIHHLC SDDSPSFPSS PSPSPKTASR VFHRVRAANL ILKSWPTRQS NHLLRADSEP INLSRNQNPE SDSKQSKTKT
101: EPDVRISIPG AEKSIVVYFT SLRVVRPTFE ACKSVTSILH SFPVRIDERD LSMDASFSTE LQRIFGKDQN QNQNQAKTPK LPRVFIGGRY IGGAEEVKQL
201: HEIGELKKLV QELPKIEPGV CEMCGGHRFV PCKDCHGSHK VHTEKLGFRT CLTCNENGLV RCSSCSFPQS PPP

Arabidopsis Description

At5g58530 [Source:UniProtKB/TrEMBL;Acc:Q9FGG8]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.