Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G229600.2 | |
| TraesCS2B01G251300.1 | |
| TraesCS2D01G233500.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G58530.1 | TraesCS2A01G229600.2 | AT1G30860.1 | 21798944 |
| AT5G58530.1 | TraesCS2B01G251300.1 | AT1G30860.1 | 21798944 |
| AT5G58530.1 | TraesCS2D01G233500.1 | AT1G30860.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G343100.1 | Wheat | plastid | 97.98 | 96.81 |
| TraesCS3B01G381400.1 | Wheat | mitochondrion, plastid | 96.77 | 96.39 |
| HORVU3Hr1G087930.1 | Barley | plastid | 93.15 | 93.15 |
| Os01t0829400-01 | Rice | mitochondrion | 85.48 | 83.14 |
| Zm00001d012471_P001 | Maize | cytosol, plastid | 38.31 | 82.61 |
| KXG33640 | Sorghum | mitochondrion | 82.66 | 77.36 |
| Zm00001d043006_P001 | Maize | plastid | 80.65 | 69.2 |
| Os10t0343900-01 | Rice | cytosol | 35.08 | 65.91 |
| GSMUA_Achr5P29410_001 | Banana | mitochondrion | 55.24 | 59.31 |
| GSMUA_Achr5P14280_001 | Banana | plastid | 51.61 | 55.9 |
| GSMUA_Achr4P18760_001 | Banana | plastid | 51.21 | 53.81 |
| TraesCS1A01G296500.1 | Wheat | mitochondrion | 52.42 | 51.38 |
| GSMUA_Achr6P32840_001 | Banana | cytosol | 47.18 | 50.21 |
| HORVU7Hr1G076170.1 | Barley | plastid | 44.35 | 49.55 |
| GSMUA_Achr6P23380_001 | Banana | mitochondrion | 46.37 | 48.94 |
| GSMUA_Achr7P18270_001 | Banana | mitochondrion | 50.81 | 48.46 |
| TraesCS1A01G222600.1 | Wheat | mitochondrion | 43.95 | 47.19 |
| OQU81447 | Sorghum | plastid | 35.08 | 46.03 |
| VIT_06s0004g07040.t01 | Wine grape | cytosol, mitochondrion | 44.76 | 45.12 |
| CDX74801 | Canola | cytosol | 29.84 | 44.31 |
| Bra002640.1-P | Field mustard | cytosol | 20.97 | 44.07 |
| KRG97693 | Soybean | plastid | 39.92 | 43.23 |
| KRH30192 | Soybean | plastid | 39.92 | 42.86 |
| KRH31178 | Soybean | plastid | 39.52 | 42.79 |
| KRH14919 | Soybean | plastid | 41.53 | 42.56 |
| TraesCS2A01G128800.1 | Wheat | cytosol | 34.68 | 42.36 |
| TraesCS4A01G148500.1 | Wheat | cytosol | 34.68 | 42.16 |
| KRG98239 | Soybean | plastid | 39.92 | 41.95 |
| PGSC0003DMT400078241 | Potato | cytosol, plastid | 39.92 | 41.25 |
| PGSC0003DMT400078242 | Potato | cytosol, plastid | 41.94 | 40.94 |
| Solyc06g082180.1.1 | Tomato | cytosol, plastid | 41.53 | 40.55 |
| Bra020363.1-P | Field mustard | cytosol, plastid | 40.73 | 40.08 |
| CDY59509 | Canola | cytosol, plastid | 40.32 | 39.68 |
| CDY32696 | Canola | cytosol, plastid | 39.11 | 38.65 |
| VIT_13s0067g01650.t01 | Wine grape | plastid | 44.35 | 37.41 |
| KRH72724 | Soybean | plastid | 41.13 | 36.3 |
| CDY32794 | Canola | peroxisome | 37.9 | 36.29 |
| AT5G58530.1 | Thale cress | cytosol, plastid | 39.52 | 35.9 |
| CDY18861 | Canola | mitochondrion | 35.08 | 35.37 |
| Bra004972.1-P | Field mustard | mitochondrion | 34.68 | 34.82 |
| KRH17081 | Soybean | plastid | 42.34 | 34.77 |
| CDX74802 | Canola | cytosol, mitochondrion | 34.27 | 34.41 |
| KRH73271 | Soybean | plastid | 41.13 | 33.89 |
| Bra004971.1-P | Field mustard | plastid | 33.47 | 32.81 |
| TraesCS5A01G372200.1 | Wheat | mitochondrion | 33.06 | 24.92 |
| TraesCS2A01G249000.1 | Wheat | mitochondrion | 27.02 | 24.81 |
| TraesCS4A01G016500.1 | Wheat | mitochondrion | 32.66 | 24.55 |
| TraesCS6A01G305800.1 | Wheat | mitochondrion | 36.69 | 23.64 |
| Solyc06g082170.2.1 | Tomato | cytosol, plastid | 39.11 | 23.37 |
| TraesCS1A01G103100.1 | Wheat | cytosol | 28.23 | 23.03 |
| TraesCS7A01G185200.1 | Wheat | mitochondrion, plastid | 37.5 | 20.44 |
| TraesCS3A01G340600.1 | Wheat | plastid | 30.65 | 18.54 |
| TraesCS2A01G521700.1 | Wheat | plastid | 33.47 | 18.12 |
| TraesCS2A01G295000.1 | Wheat | mitochondrion | 29.44 | 17.22 |
| TraesCS3A01G158800.1 | Wheat | cytosol | 27.82 | 17.04 |
Protein Annotations
| Gene3D:3.40.30.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 | GO:GO:0009055 |
| GO:GO:0009987 | GO:GO:0015035 | GO:GO:0019725 | GO:GO:0045454 | InterPro:Glutaredoxin | InterPro:IPR002109 |
| PFAM:PF00462 | PFscan:PS51354 | PANTHER:PTHR10168 | PANTHER:PTHR10168:SF75 | SUPFAM:SSF52833 | InterPro:Thioredoxin-like_sf |
| EnsemblPlantsGene:TraesCS3A01G349200 | EnsemblPlants:TraesCS3A01G349200.1 | TIGR:cd03031 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr3A:+:597919563..597920309
Molecular Weight (calculated)
26500.8 Da
IEP (calculated)
9.830
GRAVY (calculated)
-0.196
Length
248 amino acids
Sequence
(BLAST)
(BLAST)
001: MWLPWVKTRS SSPTSASSAS TCSSTALVAA SPRLSFNSPS LKDLQALLRS DHAAPSPSPP QPPCSPSAAR VFHRVRVAAS ALRALRTLQA PPPAAEADRR
101: VVLYYTSLHV VRGTYEDCRA ARAILRGLRA SVDERDLAMD ARYLEELTAL LPRARRITLP QVFVGGRHLG GAEELRRLHE SGELRRVVAG AAPLAACARC
201: GGERYVLCGS CDGSHKRYSL KGGGGFRTCA GCNENGLVRC PDCSPPAV
101: VVLYYTSLHV VRGTYEDCRA ARAILRGLRA SVDERDLAMD ARYLEELTAL LPRARRITLP QVFVGGRHLG GAEELRRLHE SGELRRVVAG AAPLAACARC
201: GGERYVLCGS CDGSHKRYSL KGGGGFRTCA GCNENGLVRC PDCSPPAV
001: MWRPWRKSSV KIHDTYSPTT ASFKDIHHLC SDDSPSFPSS PSPSPKTASR VFHRVRAANL ILKSWPTRQS NHLLRADSEP INLSRNQNPE SDSKQSKTKT
101: EPDVRISIPG AEKSIVVYFT SLRVVRPTFE ACKSVTSILH SFPVRIDERD LSMDASFSTE LQRIFGKDQN QNQNQAKTPK LPRVFIGGRY IGGAEEVKQL
201: HEIGELKKLV QELPKIEPGV CEMCGGHRFV PCKDCHGSHK VHTEKLGFRT CLTCNENGLV RCSSCSFPQS PPP
101: EPDVRISIPG AEKSIVVYFT SLRVVRPTFE ACKSVTSILH SFPVRIDERD LSMDASFSTE LQRIFGKDQN QNQNQAKTPK LPRVFIGGRY IGGAEEVKQL
201: HEIGELKKLV QELPKIEPGV CEMCGGHRFV PCKDCHGSHK VHTEKLGFRT CLTCNENGLV RCSSCSFPQS PPP
Arabidopsis Description
At5g58530 [Source:UniProtKB/TrEMBL;Acc:Q9FGG8]
SUBAcon: [cytosol,plastid]
SUBAcon: [cytosol,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.