Factsheet for TraesCS1A01G296500.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G229600.2
TraesCS2B01G251300.1
TraesCS2D01G233500.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58530.1	TraesCS2A01G229600.2	AT1G30860.1	21798944
AT5G58530.1	TraesCS2B01G251300.1	AT1G30860.1	21798944
AT5G58530.1	TraesCS2D01G233500.1	AT1G30860.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G294800.1	Wheat	plastid	95.26	96.02
TraesCS1B01G305600.1	Wheat	mitochondrion, plastid	94.47	95.22
HORVU1Hr1G070570.1	Barley	plastid	86.96	84.29
Os05t0471350-00	Rice	mitochondrion, plastid	55.73	54.86
TraesCS3A01G349200.1	Wheat	plastid	51.38	52.42
GSMUA_Achr5P29410_001	Banana	mitochondrion	41.9	45.89
GSMUA_Achr4P18760_001	Banana	plastid	41.9	44.92
GSMUA_Achr5P14280_001	Banana	plastid	40.32	44.54
Bra002640.1-P	Field mustard	cytosol	19.76	42.37
GSMUA_Achr6P32840_001	Banana	cytosol	37.55	40.77
GSMUA_Achr6P23380_001	Banana	mitochondrion	37.55	40.43
GSMUA_Achr7P18270_001	Banana	mitochondrion	40.32	39.23
KRH30192	Soybean	plastid	35.18	38.53
KRG98239	Soybean	plastid	35.18	37.71
TraesCS1A01G222600.1	Wheat	mitochondrion	34.39	37.66
KRH14919	Soybean	plastid	35.97	37.6
KRG97693	Soybean	plastid	33.6	37.12
KRH31178	Soybean	plastid	33.6	37.12
TraesCS4A01G148500.1	Wheat	cytosol	29.64	36.76
CDX74801	Canola	cytosol	24.11	36.53
TraesCS2A01G128800.1	Wheat	cytosol	28.46	35.47
VIT_06s0004g07040.t01	Wine grape	cytosol, mitochondrion	34.39	35.37
CDY59509	Canola	cytosol, plastid	34.39	34.52
CDY32794	Canola	peroxisome	34.78	33.98
PGSC0003DMT400078241	Potato	cytosol, plastid	32.02	33.75
CDY32696	Canola	cytosol, plastid	33.2	33.47
Bra020363.1-P	Field mustard	cytosol, plastid	33.2	33.33
Solyc06g082180.1.1	Tomato	cytosol, plastid	32.81	32.68
PGSC0003DMT400078242	Potato	cytosol, plastid	32.41	32.28
AT5G58530.1	Thale cress	cytosol, plastid	34.39	31.87
VIT_13s0067g01650.t01	Wine grape	plastid	36.76	31.63
KRH72724	Soybean	plastid	33.99	30.61
KRH73271	Soybean	plastid	35.57	29.9
CDY18861	Canola	mitochondrion	28.06	28.86
KRH17081	Soybean	plastid	34.39	28.81
Bra004972.1-P	Field mustard	mitochondrion	28.06	28.74
CDX74802	Canola	cytosol, mitochondrion	28.06	28.74
Bra004971.1-P	Field mustard	plastid	26.48	26.48
TraesCS2A01G249000.1	Wheat	mitochondrion	24.11	22.59
TraesCS1A01G103100.1	Wheat	cytosol	25.3	21.05
TraesCS6A01G305800.1	Wheat	mitochondrion	31.62	20.78
TraesCS4A01G016500.1	Wheat	mitochondrion	26.88	20.61
TraesCS5A01G372200.1	Wheat	mitochondrion	26.48	20.36
Solyc06g082170.2.1	Tomato	cytosol, plastid	30.43	18.55
TraesCS7A01G185200.1	Wheat	mitochondrion, plastid	32.02	17.8
TraesCS3A01G340600.1	Wheat	plastid	27.67	17.07
TraesCS2A01G521700.1	Wheat	plastid	30.83	17.03
TraesCS2A01G295000.1	Wheat	mitochondrion	26.09	15.57
TraesCS3A01G158800.1	Wheat	cytosol	24.9	15.56

Protein Annotations

EnsemblPlants:TraesCS1A01G296500.1	EnsemblPlantsGene:TraesCS1A01G296500	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0009055	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725	GO:GO:0045454	InterPro:Glutaredoxin
InterPro:IPR002109	InterPro:Thioredoxin-like_sf	PANTHER:PTHR10168	PANTHER:PTHR10168:SF95	PFAM:PF00462	PFscan:PS51354
SEG:seg	SUPFAM:SSF52833	TIGR:cd03031	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr1A:-:491310819..491311944

Molecular Weight (calculated)

27308.6 Da

IEP (calculated)

9.068

GRAVY (calculated)

-0.215

Length

253 amino acids

Sequence
(BLAST)

001: MAMWPSWVKT RASRSKSSPS TALVAAAATT RRFSIASHSP SLKDIPSLVR PEHPRPPRVF HRLRVAASAL RLLRALKSAS AHATAREPEV HVVLYSTSLR
101: VVRRTYEDCY TVRFILRGIG ATVDERDLAV DNAFVAEFAA LLPSRLGLAL PQVFVDGRHL GGVEEVQRLH ECGELNRIVA APTISSAPAH PPCGRCGDER
201: HVPCGSCDGS RKKHSDDGSR KKQSDDEDGA LTCAACNASG LVRCPDCLFP AGA

Best Arabidopsis Sequence Match ( AT5G13810.1 )
(BLAST)

001: MAGLEKNADF SGKTTKSATT TSFFNRSLTI HGRTVVDSGP KSHNLNPSLN RTTSITKFYT PVESMGTSLK GKVKNLCRLF ETSKPVKPAL AEIPQKQKSG
101: KSLLPESRIS PFSSLNNSVI RLPGTEDRIV VYFTSLRGIR RTYEDCYAVR MIFRGFRVWI DERDVSMDIA YRKELQIAMG EKSVSLPQVF IMGKYVGGAD
201: VIKSLFEIGE LAKILKEFPM RQPGFVCHCC GDIRFVPCSN CSGSKKLFDE DEDRVKRCPE CNENGLIRCP DCSS

Arabidopsis Description

AT5g13810/MAC12_24 [Source:UniProtKB/TrEMBL;Acc:Q9FFZ0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.