Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G229600.2 | |
| TraesCS2B01G251300.1 | |
| TraesCS2D01G233500.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G58530.1 | TraesCS2A01G229600.2 | AT1G30860.1 | 21798944 |
| AT5G58530.1 | TraesCS2B01G251300.1 | AT1G30860.1 | 21798944 |
| AT5G58530.1 | TraesCS2D01G233500.1 | AT1G30860.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G296500.1 | Wheat | mitochondrion | 96.02 | 95.26 |
| TraesCS1B01G305600.1 | Wheat | mitochondrion, plastid | 95.22 | 95.22 |
| HORVU1Hr1G070570.1 | Barley | plastid | 87.25 | 83.91 |
| Os05t0471350-00 | Rice | mitochondrion, plastid | 56.57 | 55.25 |
| TraesCS3D01G343100.1 | Wheat | plastid | 51.79 | 51.79 |
| GSMUA_Achr5P29410_001 | Banana | mitochondrion | 42.63 | 46.32 |
| GSMUA_Achr4P18760_001 | Banana | plastid | 43.03 | 45.76 |
| GSMUA_Achr5P14280_001 | Banana | plastid | 41.04 | 44.98 |
| Bra002640.1-P | Field mustard | cytosol | 20.72 | 44.07 |
| GSMUA_Achr6P32840_001 | Banana | cytosol | 38.25 | 41.2 |
| GSMUA_Achr6P23380_001 | Banana | mitochondrion | 37.05 | 39.57 |
| KRH30192 | Soybean | plastid | 35.06 | 38.1 |
| GSMUA_Achr7P18270_001 | Banana | mitochondrion | 39.44 | 38.08 |
| KRH14919 | Soybean | plastid | 36.65 | 38.02 |
| KRG98239 | Soybean | plastid | 35.06 | 37.29 |
| KRH31178 | Soybean | plastid | 33.86 | 37.12 |
| KRG97693 | Soybean | plastid | 33.86 | 37.12 |
| TraesCS1D01G224200.1 | Wheat | mitochondrion | 33.86 | 36.8 |
| CDX74801 | Canola | cytosol | 24.3 | 36.53 |
| VIT_06s0004g07040.t01 | Wine grape | cytosol, mitochondrion | 35.06 | 35.77 |
| CDY59509 | Canola | cytosol, plastid | 34.66 | 34.52 |
| CDY32794 | Canola | peroxisome | 35.46 | 34.36 |
| TraesCS2D01G131300.1 | Wheat | cytosol | 28.29 | 34.13 |
| PGSC0003DMT400078241 | Potato | cytosol, plastid | 32.27 | 33.75 |
| CDY32696 | Canola | cytosol, plastid | 33.47 | 33.47 |
| Bra020363.1-P | Field mustard | cytosol, plastid | 33.47 | 33.33 |
| Solyc06g082180.1.1 | Tomato | cytosol, plastid | 33.07 | 32.68 |
| AT5G58530.1 | Thale cress | cytosol, plastid | 35.46 | 32.6 |
| PGSC0003DMT400078242 | Potato | cytosol, plastid | 32.67 | 32.28 |
| VIT_13s0067g01650.t01 | Wine grape | plastid | 37.45 | 31.97 |
| KRH72724 | Soybean | plastid | 34.66 | 30.96 |
| KRH73271 | Soybean | plastid | 36.65 | 30.56 |
| KRH17081 | Soybean | plastid | 35.06 | 29.14 |
| CDY18861 | Canola | mitochondrion | 28.29 | 28.86 |
| Bra004972.1-P | Field mustard | mitochondrion | 28.29 | 28.74 |
| CDX74802 | Canola | cytosol, mitochondrion | 28.29 | 28.74 |
| Bra004971.1-P | Field mustard | plastid | 26.69 | 26.48 |
| TraesCS2D01G250600.1 | Wheat | mitochondrion | 23.9 | 22.22 |
| TraesCS6D01G285000.1 | Wheat | mitochondrion | 32.67 | 21.69 |
| TraesCS1D01G095500.1 | Wheat | cytosol | 25.9 | 21.17 |
| TraesCS5D01G381700.1 | Wheat | mitochondrion | 27.09 | 21.12 |
| TraesCS4D01G286300.1 | Wheat | mitochondrion | 26.69 | 20.55 |
| Solyc06g082170.2.1 | Tomato | cytosol, plastid | 30.68 | 18.55 |
| TraesCS3D01G334100.1 | Wheat | plastid | 29.08 | 17.8 |
| TraesCS2D01G523500.1 | Wheat | plastid | 32.27 | 17.69 |
| TraesCS7D01G186600.1 | Wheat | plastid | 32.27 | 16.1 |
| TraesCS3D01G166500.1 | Wheat | cytosol | 24.7 | 15.38 |
| TraesCS2D01G292800.1 | Wheat | mitochondrion | 25.9 | 15.33 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G294800.1 | EnsemblPlantsGene:TraesCS1D01G294800 | Gene3D:3.40.30.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 |
| GO:GO:0009055 | GO:GO:0009987 | GO:GO:0015035 | GO:GO:0019725 | GO:GO:0045454 | InterPro:Glutaredoxin |
| InterPro:IPR002109 | InterPro:Thioredoxin-like_sf | PANTHER:PTHR10168 | PANTHER:PTHR10168:SF95 | PFAM:PF00462 | PFscan:PS51354 |
| SEG:seg | SUPFAM:SSF52833 | TIGR:cd03031 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr1D:+:393929118..393930225
Molecular Weight (calculated)
27058.5 Da
IEP (calculated)
8.889
GRAVY (calculated)
-0.133
Length
251 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMWPSWVKT RASSSKSSPP TALVAAAATT RRFSIASHFP SLKDIPSLVR PEHPRPPRVF HRLRVAASAL RLLRALKSAS AHATARELEV HVVLYSTSLR
101: VVRRTYEDCY TVRFILRGIG ATVDERDLAV DNAFVAEFAA LLPPRLGLAL PQVFVDGRHL GGVEEVQRLH ECGELNRIVA APISPGPAHP PCGRCGDERH
201: VPCGSCDGSR KKHSDDGSGK KQSDEDGVLT CAACNASGLV RCPDCLFPAA A
101: VVRRTYEDCY TVRFILRGIG ATVDERDLAV DNAFVAEFAA LLPPRLGLAL PQVFVDGRHL GGVEEVQRLH ECGELNRIVA APISPGPAHP PCGRCGDERH
201: VPCGSCDGSR KKHSDDGSGK KQSDEDGVLT CAACNASGLV RCPDCLFPAA A
001: MAGLEKNADF SGKTTKSATT TSFFNRSLTI HGRTVVDSGP KSHNLNPSLN RTTSITKFYT PVESMGTSLK GKVKNLCRLF ETSKPVKPAL AEIPQKQKSG
101: KSLLPESRIS PFSSLNNSVI RLPGTEDRIV VYFTSLRGIR RTYEDCYAVR MIFRGFRVWI DERDVSMDIA YRKELQIAMG EKSVSLPQVF IMGKYVGGAD
201: VIKSLFEIGE LAKILKEFPM RQPGFVCHCC GDIRFVPCSN CSGSKKLFDE DEDRVKRCPE CNENGLIRCP DCSS
101: KSLLPESRIS PFSSLNNSVI RLPGTEDRIV VYFTSLRGIR RTYEDCYAVR MIFRGFRVWI DERDVSMDIA YRKELQIAMG EKSVSLPQVF IMGKYVGGAD
201: VIKSLFEIGE LAKILKEFPM RQPGFVCHCC GDIRFVPCSN CSGSKKLFDE DEDRVKRCPE CNENGLIRCP DCSS
Arabidopsis Description
AT5g13810/MAC12_24 [Source:UniProtKB/TrEMBL;Acc:Q9FFZ0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.